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Information on SUBCLASS 4.2.1
Subclass Accession number: 4777
Subclass: 4.2.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 33

Average sequence ID (%) : 17.5 +/- 17.4
Average RMSD (Å) : 0.452 +/- 0.217

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: pXpPppXX
(φψ)-conformation: aabaapaa
Pattern: x[cfikltv][adeknqrs]x[adeknqr][apv][cdehknqrsty][dehnrswy]xx[agilvy][dhkqrwy]x
Conservation:-0.6000.1760.213-0.7960.2863.073-0.2040.049-0.826-0.4910.032-0.351-0.559
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a17_*_1121a17   -122134VVKVKPHDKDAKMHHHHSTT-HHHHHaaaabaaxaaaaa
1a17_*_441a17   -5466AIELNPSNAIYYGHHHHSTT-HHHHHaaaabaaxaaaaa
1a17_*_781a17   -88100AIELDKKYIKGYYHHHH-TT-HHHHHaaaabaaxaaaaa
1ciy_*_901ciy   -116128EWEADPTNPALREHHHHSTT-HHHHHaaaabaapaaaaa
1d8d_A_1481d8d   A158170IIEEQPKNYQVWHHHHH-TT-HHHHHaaaabaabaaaaa
1dow_A_1061dow   A110122EFADDPCSSVKRGHHHHSTT-HHHHHaaaabaaxaaaaa
1elr_A_2411elr   A251263AKELDPTNMTYITHHHH-TT-HHHHHaaaabaaxaaaaa
1elw_A_201elw   A3042AIKLDPHNHVLYSHHHH-TT-HHHHHaaaabaaxaaaaa
1elw_A_541elw   A6476TVDLKPDWGKGYSHHHH-TT-HHHHHaaaabaaxaaaaa
1elw_A_881elw   A98110GLKHEANNPQLKEHHTT-TT-HHHHHaaaabaaxaaaaa
1fch_A_3141fch   A324336AVQQDPKHMEAWQHHHS-TT-HHHHHaaaabaaxaaaaa
1fch_A_3481fch   A358370CLELKPDNQTALMHHHH-TT-HHHHHaaaabaaxaaaaa
1fch_A_4671fch   A477489ALSVRPNDYLLWNHHHH-TT-HHHHHaaaabaaxaaaaa
1fch_A_5011fch   A511523ALELQPGYIRSRYHHHH-TT-HHHHHaaaabaaxaaaaa
1fp6_A_2271fp6   A227239VIEYDPKAKQADEHHHH-TTSHHHHHaaaabaaxaaaaa
1h6g_A_4541h6g   A470482ALAAKPQSKLAQEHHHH-TT-HHHHHaaaabaaxaaaaa
1hh8_A_531hh8   A6375SINRDKHLAVAYFHHHH-TT-HHHHHaaaabaaxaaaaa
1hxi_A_3651hxi   A375387VCQKEPEREEAWRHHHHSTT-HHHHHaaaabaaxaaaaa
1ihg_A_2891ihg   A299311ALEIDPSNTKALYHHTT-TT-HHHHHaaaabaaxaaaaa
1ihg_A_3231ihg   A333345AQEIAPEDKAIQAHHHH-TT-HHHHHaaaabaaxaaaaa
1ld8_A_1141ld8   A123135AIELNAANYTVWHHHHH-TT-HHHHHaaaabaaxaaaaa
1ld8_A_1851ld8   A192204ILNQDAKNYHAWQHHHH-TT-HHHHHaaaabaapaaaaa
1ld8_A_2191ld8   A226238LLKEDVRNNSVWNHHHH-TT-HHHHHaaaabaaxaaaaa
1ld8_A_2531ld8   A266278MIKLVPHNESAWNHHHHSTT-HHHHHaaaabaaxaaaaa
1lki_*_761lki   -101113QKVLNPTAVSLQVHHHH-TT-HHHHHaaaabaaxaaaaa
1lrz_A_2451lrz   A269281DIEKRPENKKAHNHHHH-TT-HHHHHaaaabaaxaaaaa
1mhq_A_1251mhq   A138150WTVWFPEDIKIRDHHHH-TT-HHHHHaaaabaaxaaaaa
1nzn_A_901nzn   A100112LLQTEPQNNQAKEHHHH-TT-HHHHHaaaabaaxaaaaa
1pjr_*_3901pjr   -400412RVIANPDDDLSLLHHHH-TT-HHHHHaaaabaaxaaaaa
1qh5_A_1761qh5   A183195ARHVEPGNAAIREHHHH-TT-HHHHHaaaabaaxaaaaa
1qsa_A_551qsa   A6173FVRANPTLPPARTHHHH-TT-HHHHHaaaabaaxaaaaa
1rke_A_681rke   A94106MLQSDPYSVPARDHHTT-TT-HHHHHaaaabaapaaaaa
1ujk_A_1091ujk   A122134WTVGLPEEVKIAEHHHH-TT-HHHHHaaaabaaxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d8d_A_1481d8d   A     FII[(3,7,11-TRIMETHYL-DODECA-2,6,10-TRIENYLOXYCARBAMOYL)-METHYL]-PHOSPHONIC ACID K - 164
1d8d_A_1481d8d   A     FII[(3,7,11-TRIMETHYL-DODECA-2,6,10-TRIENYLOXYCARBAMOYL)-METHYL]-PHOSPHONIC ACID Y - 166
1dow_A_1061dow   A     MSESELENOMETHIONINE S - 106
1dow_A_1061dow   A     MSESELENOMETHIONINE A - 107
1dow_A_1061dow   A     MSESELENOMETHIONINE A - 108
1dow_A_1061dow   A     MSESELENOMETHIONINE G - 109
1dow_A_1061dow   A     MSESELENOMETHIONINE F - 111
1dow_A_1061dow   A     MSESELENOMETHIONINE V - 119
1dow_A_1061dow   A     MSESELENOMETHIONINE K - 120
1dow_A_1061dow   A     MSESELENOMETHIONINE R - 121
1dow_A_1061dow   A     MSESELENOMETHIONINE G - 122
1elr_A_2411elr   A     NINICKEL (II) ION T - 243
1elr_A_2411elr   A     NINICKEL (II) ION H - 247
1elw_A_201elw   A     NINICKEL (II) ION P - 35
1elw_A_201elw   A     NINICKEL (II) ION H - 36
1elw_A_541elw   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL V - 65
1elw_A_541elw   A     NINICKEL (II) ION P - 69
1elw_A_541elw   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL P - 69
1elw_A_541elw   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL D - 70
1elw_A_541elw   A     NINICKEL (II) ION Y - 75
1elw_A_541elw   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL Y - 75
1elw_A_881elw   A     NINICKEL (II) ION E - 97
1elw_A_881elw   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL E - 97
1elw_A_881elw   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL G - 98
1elw_A_881elw   A     NINICKEL (II) ION K - 100
1elw_A_881elw   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL K - 100
1elw_A_881elw   A     NINICKEL (II) ION H - 101
1elw_A_881elw   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL H - 101
1fp6_A_2271fp6   A     ADPADENOSINE-5'-DIPHOSPHATE Q - 236
1fp6_A_2271fp6   A     ADPADENOSINE-5'-DIPHOSPHATE Y - 240
1h6g_A_4541h6g   A     MSESELENOMETHIONINE A - 454
1h6g_A_4541h6g   A     CACALCIUM ION A - 454
1h6g_A_4541h6g   A     MSESELENOMETHIONINE S - 455
1h6g_A_4541h6g   A     CACALCIUM ION S - 455
1h6g_A_4541h6g   A     MSESELENOMETHIONINE Q - 456
1h6g_A_4541h6g   A     CACALCIUM ION Q - 456
1h6g_A_4541h6g   A     MSESELENOMETHIONINE L - 457
1h6g_A_4541h6g   A     MSESELENOMETHIONINE V - 464
1h6g_A_4541h6g   A     MSESELENOMETHIONINE I - 465
1h6g_A_4541h6g   A     MSESELENOMETHIONINE A - 467
1h6g_A_4541h6g   A     CACALCIUM ION A - 467
1h6g_A_4541h6g   A     MSESELENOMETHIONINE A - 468
1h6g_A_4541h6g   A     CACALCIUM ION A - 468
1h6g_A_4541h6g   A     MSESELENOMETHIONINE L - 469
1h6g_A_4541h6g   A     MSESELENOMETHIONINE L - 471
1h6g_A_4541h6g   A     CACALCIUM ION L - 471
1h6g_A_4541h6g   A     MSESELENOMETHIONINE L - 479
1h6g_A_4541h6g   A     MSESELENOMETHIONINE A - 480
1h6g_A_4541h6g   A     CACALCIUM ION A - 480
1h6g_A_4541h6g   A     MSESELENOMETHIONINE Q - 481
1h6g_A_4541h6g   A     CACALCIUM ION Q - 481
1h6g_A_4541h6g   A     MSESELENOMETHIONINE E - 482
1h6g_A_4541h6g   A     CACALCIUM ION E - 482
1hxi_A_3651hxi   A     MSESELENOMETHIONINE L - 365
1hxi_A_3651hxi   A     MSESELENOMETHIONINE E - 367
1hxi_A_3651hxi   A     MSESELENOMETHIONINE A - 368
1hxi_A_3651hxi   A     MSESELENOMETHIONINE A - 369
1hxi_A_3651hxi   A     MSESELENOMETHIONINE A - 371
1hxi_A_3651hxi   A     MSESELENOMETHIONINE F - 372
1hxi_A_3651hxi   A     MSESELENOMETHIONINE E - 373
1hxi_A_3651hxi   A     MSESELENOMETHIONINE A - 374
1hxi_A_3651hxi   A     MSESELENOMETHIONINE V - 375
1hxi_A_3651hxi   A     MSESELENOMETHIONINE Q - 377
1hxi_A_3651hxi   A     MSESELENOMETHIONINE K - 378
1hxi_A_3651hxi   A     MSESELENOMETHIONINE E - 379
1hxi_A_3651hxi   A     MSESELENOMETHIONINE R - 382
1hxi_A_3651hxi   A     MSESELENOMETHIONINE E - 384
1hxi_A_3651hxi   A     MSESELENOMETHIONINE A - 385
1hxi_A_3651hxi   A     MSESELENOMETHIONINE S - 388
1hxi_A_3651hxi   A     MGMAGNESIUM ION A - 394
1hxi_A_3651hxi   A     MGMAGNESIUM ION E - 395
1ld8_A_1851ld8   A     FPPFARNESYL DIPHOSPHATE D - 196
1ld8_A_1851ld8   A     FPPFARNESYL DIPHOSPHATE K - 198
1ld8_A_1851ld8   A     FPPFARNESYL DIPHOSPHATE N - 199
1ld8_A_1851ld8   A     FPPFARNESYL DIPHOSPHATE Y - 200
1ld8_A_1851ld8   A     FPPFARNESYL DIPHOSPHATE H - 201
1ld8_A_1851ld8   A     U49(20S)-19,20,21,22-TETRAHYDRO-19-OXO-5H-18,20-ETHANO-12,14-ETHENO-6,10-METHENO-18H-BENZ[D]IMIDAZO[4,3-K][1, 6,9,12]OXATRIAZA-CYCLOOCTADECOSINE-9-CARBONITRILE H - 201
1ld8_A_2191ld8   A     SUCSUCROSE Y - 241
1ld8_A_2191ld8   A     SUCSUCROSE S - 245
1ld8_A_2531ld8   A     SUCSUCROSE G - 282
1ld8_A_2531ld8   A     SUCSUCROSE I - 283
1nzn_A_901nzn   A     MSESELENOMETHIONINE Y - 90
1nzn_A_901nzn   A     MSESELENOMETHIONINE E - 91
1nzn_A_901nzn   A     MSESELENOMETHIONINE L - 94
1nzn_A_901nzn   A     MSESELENOMETHIONINE L - 116
1nzn_A_901nzn   A     MSESELENOMETHIONINE I - 117
1nzn_A_901nzn   A     MSESELENOMETHIONINE D - 118
1nzn_A_901nzn   A     MSESELENOMETHIONINE K - 119
1qh5_A_1761qh5   A     GTTGLUTATHIONE N - 178
1qh5_A_1761qh5   A     GTTGLUTATHIONE N - 179

Clusters included in this Subclass
CLUSTER: HH.3.24
CLUSTER: HH.5.7
CLUSTER: HH.6.214