Home

Classification

Query

Statistics

Contact

Links

Help

PDB code:

Information on SUBCLASS 0.1.4

Subclass Accession number: 5191 Subclass: 0.1.4 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 33 Average sequence ID (%) : 8.5 +/- 13.2 Average RMSD (Å) : 0.582 +/- 0.172 Consensus geometry d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1c7g_A_447	1c7g	A	447	454	RFFTARFD	HHHH-EEE	aaaaxbbb
1dfo_A_135	1dfo	A	136	143	SGKLYNIV	HHHHSEEE	aaaabxxb
1dtd_A_449	1dtd	A	454	461	ILDALDIF	HHHH-EEE	aaaabxbb
1ek6_A_70	1ek6	A	76	83	LFKKYSFM	HHHH--EE	aaaabxba
1eke_A_46	1eke	A	56	63	LENLGYVE	HHHHSEEE	aaaabbbb
1fmj_A_99	1fmj	A	99	105	MSLRYIY.	HHHHSEE.	aaaabxx.
1g61_A_2015	1g61	A	2015	2021	IGVLALT.	HHHH-EE.	aaaabbb.
1g61_A_2059	1g61	A	2059	2065	VGSLSVA.	HHHH-EE.	aaaabbb.
1g62_A_59	1g62	A	59	65	IGRMTAG.	HHHH-EE.	aaaabbe.
1gc5_A_404	1gc5	A	413	420	LEKEFTEF	HHHHSEEE	aaaabxxa
1h16_A_529	1h16	A	538	545	AIKYAKVK	HHHHSEEE	aaaabbbb
1hdh_A_30	1hdh	A	35	42	LAIAGLRL	HHHHSEEE	aaaaxbxb
1hup_*_90	1hup	-	107	114	TFSLGKQV	HHHTSEEE	aaaabbbb
1j0h_A_501	1j0h	A	502	509	SLRRGEIS	HHHH-EEE	aaaaxxbb
1ji1_A_549	1ji1	A	550	557	ALRTGSFM	HHHHSEEE	aaaaxxbb
1ji2_A_498	1ji2	A	499	506	SLTRGNVR	HHHH-EEE	aaaaxxbb
1kag_A_88	1kag	A	94	101	LSARGVVV	HHHHSEEE	aaaabxxb
1khb_A_164	1khb	A	170	176	MRIMTRM.	HHHHSEE.	aaaabxb.
1kl1_A_131	1kl1	A	132	139	SGVQYNFV	HHHHSEEE	aaaabxxb
1kol_A_144	1kol	A	144	150	ADFNLLK.	HHHH-EE.	aaaaxbx.
1l5j_A_248	1l5j	A	254	261	LWFMGDDI	HHHHSEEE	aaaabbxb
1l9x_A_184	1l9x	A	186	193	LKKFFNVL	HHHHEEEE	aaaabxxa
1lst_*_75	1lst	-	77	83	RQQEIAF.	HHHH-EE.	aaaabbb.
1m3q_A_152	1m3q	A	163	170	CQAFGPRL	HHHHS-EE	aaaaxxxa
1m4l_A_94	1m4l	A	99	106	ILDSMDIF	HHHH-EEE	aaaabbbb
1n8q_A_331	1n8q	A	331	338	LKEIFRTD	HHHHSEEE	aaaabxbb
1ou0_A_87	1ou0	A	89	96	VLERNRVV	HHHH-EEE	aaaabbbb
1p1j_A_109	1p1j	A	109	116	MTQCSTLK	HHHH-EEE	aaaabbbx
1p2z_A_407	1p2z	A	407	413	PDVRIIE.	HHHHSEE.	aaaabxb.
1pam_A_402	1pam	A	403	410	AIAYGSTH	HHHH-EEE	aaaaxxbb
1q0b_A_231	1q0b	A	231	238	YSSRSHSV	HHHH-EEE	aaaaxbbb
1qho_A_403	1qho	A	404	411	AIQYGTTT	HHHH-EEE	aaaaxxbb
1vhx_A_42	1vhx	A	48	55	LIKDYTID	HHTTSEEE	aaaabbxa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ek6_A_70	1ek6	A	TMATETRAMETHYLAMMONIUM ION	M - 83
1ek6_A_70	1ek6	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	H - 87
1eke_A_46	1eke	A	MSESELENOMETHIONINE	R - 65
1fmj_A_99	1fmj	A	RTLRETINOL	Y - 105
1m3q_A_152	1m3q	A	DRZ3',4'-DIHYDROXY-PENTANAL-5'-PHOSPHATE	I - 152
1m3q_A_152	1m3q	A	ANG8-AMINOGUANINE	I - 152
1m3q_A_152	1m3q	A	DRZ3',4'-DIHYDROXY-PENTANAL-5'-PHOSPHATE	A - 153
1m3q_A_152	1m3q	A	DRZ3',4'-DIHYDROXY-PENTANAL-5'-PHOSPHATE	I - 155
1m3q_A_152	1m3q	A	ANG8-AMINOGUANINE	I - 155
1q0b_A_231	1q0b	A	MGMAGNESIUM ION	S - 232
1q0b_A_231	1q0b	A	ADPADENOSINE-5'-DIPHOSPHATE	S - 232
1q0b_A_231	1q0b	A	ADPADENOSINE-5'-DIPHOSPHATE	S - 233
1q0b_A_231	1q0b	A	NATETHYL 4-(3-HYDROXYPHENYL)-6-METHYL-2-THIOXO-1,2,3,4-TETRAHYDROPYRIMIDINE-5-CARBOXYLATE	F - 239
1qho_A_403	1qho	A	MALMALTOSE	Q - 412
1qho_A_403	1qho	A	MALMALTOSE	R - 413
1qho_A_403	1qho	A	MALMALTOSE	W - 414
1qho_A_403	1qho	A	MALMALTOSE	I - 415

Clusters included in this Subclass

CLUSTER: HE.0.3

CLUSTER: HE.1.27

CLUSTER: HE.2.16

For any comment or web-related incidence, send an email to the webmaster.