ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 0.1.20

Subclass Accession number: 5207
Subclass: 0.1.20

PSSM

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 9

Average sequence ID (%) : 13.9 +/- 16.3
Average RMSD (Å) : 0.589 +/- 0.154

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	XXhp
(φψ)-conformation:	aabb

Pattern:	x	[degrt]	[aflv]	[ALV]	x	[aeknst]	[EHKNY]	x	[ADEGNQ]	x	x	[HKRST]	x
Conservation:	-1.315	-0.807	-0.425	1.639	-0.789	-0.028	1.792	-0.053	0.004	-1.137	0.562	0.556	-1.000

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1cdw_A_266	1cdw	A	267	278	EGLVLTHQQFSS.	HHHHHHTTTTEE.	aaaaaaaaaabb.
1g8m_A_128	1g8m	A	133	145	LRAAAKNHARVTV	HHHHHHTTTT-EE	aaaaaaaaaaxxb
1m4l_A_15	1m4l	A	23	35	DLLVAEHPQLVSK	HHHHHH-TTTEEE	aaaaaaaaaabbb
1nm1_A_55	1nm1	A	55	67	GDEAQSKRGILTL	HHHHHHTTTTEEE	eaaaaaaaaabbx
1nw2_A_30	1nw2	A	40	52	EEFAEAHADKVTV	HHHHHHHTTT-EE	aaaaaaaaaabbb
1obr_*_12	1obr	-	20	32	NTVASNYPNIVKK	HHHHHH-TTTEEE	aaaaaaaaaabbx
1ono_A_12	1ono	A	18	30	LDVVRHNPEHFRV	HHHHHH-TTTEEE	aaaaaaaaaabbx
1pox_A_38	1pox	A	41	53	MDALSAERDRIHY	HHHHHHTTTTSEE	aaaaaaaaaabbx
1qna_A_130	1qna	A	131	142	EGLAYSHAAFSS.	HHHHHHTTTTEE.	aaaaaaaaaabb.

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1g8m_A_128	1g8m	A	GGUANOSINE-5'-MONOPHOSPHATE	G - 128
1g8m_A_128	1g8m	A	GGUANOSINE-5'-MONOPHOSPHATE	G - 129
1g8m_A_128	1g8m	A	GGUANOSINE-5'-MONOPHOSPHATE	V - 130
1g8m_A_128	1g8m	A	GGUANOSINE-5'-MONOPHOSPHATE	L - 132
1g8m_A_128	1g8m	A	MSESELENOMETHIONINE	T - 144
1g8m_A_128	1g8m	A	GGUANOSINE-5'-MONOPHOSPHATE	T - 144
1nm1_A_55	1nm1	A	SO2SULFUR DIOXIDE	R - 62
1nw2_A_30	1nw2	A	ACTACETATE ION	E - 41
1nw2_A_30	1nw2	A	ZNZINC ION	F - 42
1nw2_A_30	1nw2	A	ZNZINC ION	A - 45
1nw2_A_30	1nw2	A	ACTACETATE ION	A - 45
1nw2_A_30	1nw2	A	ZNZINC ION	H - 46
1nw2_A_30	1nw2	A	ACTACETATE ION	H - 46
1obr_*_12	1obr	*	CACALCIUM ION	E - 14

Clusters included in this Subclass

CLUSTER: HE.5.26