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Information on SUBCLASS 3.11.1
Subclass Accession number: 5534
Subclass: 3.11.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 13

Average sequence ID (%) : 19.2 +/- 18.1
Average RMSD (Å) : 0.615 +/- 0.146

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XhGpphX
(φψ)-conformation: aaeaabb
Pattern: xxxx[iltv][aeklm][ADGKNRT]x[agily][GK][DEKRS][dknrsy][AFILV]x
Conservation:-0.725-0.608-0.629-0.7270.600-0.430-0.176-0.749-0.3442.8621.059-0.2200.571-0.485
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bdb_*_391bdb   -4154RLAELETDHGDNVLHHHHHHHHHGGGEEaaaaaaaaaeaabb
1chd_*_2601chd   -263276LFHSVAKHAGRNAVHHHHHHHHTGGGEEaaaaaaaaaeaabb
1f0k_A_1961f0k   A201214TMPQVAAKLGDSVTHHHHHHHHHGGGEEaaaaaaaaaeaabb
1ffv_C_141ffv   C1629EAVALLGQLGSDAKHHHHHHHHHGGGEEaaaaaaaaaeaabb
1gpm_A_2381gpm   A243256TAMLLHRAIGKNLTHHHHHHHHHGGGEEaaaaaaaaaeaaxb
1k8k_D_721k8k   D7285ADELLKRVYGSYLVHHHHHHHHHGGGEEaaaaaaaaaeaaxb
1kny_A_91kny   A1932IKERILDKYGDDVKHHHHHHHHHGGGEEaaaaaaaaaeaaxa
1lrz_A_2221lrz   A224237FYYNRLKYYKDRVLHHHHHHHHHGGGEEaaaaaaaaaeaabb
1n62_C_141n62   C1629DAVALLTKLGEDARHHHHHHHHHGGGEEaaaaaaaaaeaabb
1pq4_A_561pq4   A5871QQYFLEKIGGDLVRHHHHHHHHHGGGEEaaaaaaaaaeaabb
1psz_A_401psz   A4255IADITKNIAGDKIDHHHHHHHHHGGGEEaaaaaaaaaeaabb
1s3e_A_2151s3e   A217230VSERIMDLLGDRVKHHHHHHHHHGGGEEaaaaaaaaaeaaxb
1s5p_A_1081s5p   A112125ALAKLQDALGDRFLHHHHHHHHHGGGEEaaaaaaaaaeaabb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bdb_*_391bdb   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE R - 41
1ffv_C_141ffv   C     FADFLAVIN-ADENINE DINUCLEOTIDE K - 29
1ffv_C_141ffv   C     FADFLAVIN-ADENINE DINUCLEOTIDE L - 30
1ffv_C_141ffv   C     FADFLAVIN-ADENINE DINUCLEOTIDE L - 31
1gpm_A_2381gpm   A     POPPYROPHOSPHATE 2- V - 238
1gpm_A_2381gpm   A     POPPYROPHOSPHATE 2- D - 239
1gpm_A_2381gpm   A     AMPADENOSINE MONOPHOSPHATE D - 239
1gpm_A_2381gpm   A     POPPYROPHOSPHATE 2- S - 240
1gpm_A_2381gpm   A     AMPADENOSINE MONOPHOSPHATE S - 240
1gpm_A_2381gpm   A     POPPYROPHOSPHATE 2- S - 241
1gpm_A_2381gpm   A     AMPADENOSINE MONOPHOSPHATE V - 258
1gpm_A_2381gpm   A     AMPADENOSINE MONOPHOSPHATE F - 259
1gpm_A_2381gpm   A     AMPADENOSINE MONOPHOSPHATE V - 260
1gpm_A_2381gpm   A     AMPADENOSINE MONOPHOSPHATE D - 261
1kny_A_91kny   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER Y - 37
1kny_A_91kny   A     MGMAGNESIUM ION Y - 37
1n62_C_141n62   C     FADFLAVIN-ADENINE DINUCLEOTIDE R - 29
1n62_C_141n62   C     FADFLAVIN-ADENINE DINUCLEOTIDE P - 30

Clusters included in this Subclass
CLUSTER: HE.2.156
CLUSTER: HE.2.56
CLUSTER: HE.3.83