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Information on SUBCLASS 4.12.1
Subclass Accession number: 5653
Subclass: 4.12.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 23

Average sequence ID (%) : 20.5 +/- 20.5
Average RMSD (Å) : 0.504 +/- 0.218

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 225-270
Consensus Sequence: hhpGXphh
(φψ)-conformation: aapgpabb
Pattern: [dehkprst][adekqrst][acgikltv][afikltv][dehknqrst][DGN]x[adeknqrs][acfilmvw][AFILMV][fhilvy]
Conservation:-0.788-0.568-0.626-0.184-0.2282.566-0.395-0.054-0.6741.157-0.205
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1az9_*_1131az9   -118128YQLLNGLDVVYHHHHTT-SEEEaaaapvxabbx
1bfd_*_2571bfd   -261271SQLLEGHDVVLHHHHTT-SEEEaaaapgxabbb
1d5c_A_771d5c   A7888PSYIRDSAAAIHHHHTT-SEEEaaaapUxabbb
1duv_G_2181duv   G219229AKGVEGADFIYHHHHTT-SEEEaaaapvxabbb
1h3f_A_81h3f   A1323ALLKRGAEEIVHHHHTT-SEEEaaaapvxabbb
1hdo_A_581hdo   A6272DKTVAGQDAVIHHHHTT-SEEEaaaapvxabbb
1j1u_A_31j1u   A515EMIKRNTSEIIHHHHTT-SEEEaaaapvxabbb
1j5v_A_1201j5v   A121131EKILDGARWFHHHHHTT-SEEEaaaapvxabbb
1j6r_A_761j6r   A7989TKHLSGSKIITHHHHSS-SEEEaaaaxvbabbx
1js1_X_2231js1   X224234MKAFEGADFIYHHHHTT-SEEEaaaapvxabbb
1k6j_A_641k6j   A6878DTLFEGAHLAFHHHHTT-SEEEaaaaxvxabbb
1m66_A_791m66   A8090EKAYNGAEIILHHHHTT-SSEEaaaapvpabbb
1mb4_A_3181mb4   A318328PAKVTGTLSVPHHHHTTSS-EEaaaapvbaxbx
1mld_A_621mld   A6373PDCLKGCDVVVHHHHTT-SEEEaaaaxvxabbb
1n3l_A_71n3l   A1222HLITRNLQEVLHHHHTT-SEEEaaaaxvxabbb
1n8y_C_171n8y   C2535RHLYQGCQVVQHHHHTT-SEEEaaaaxvxabxx
1nlf_A_1211nlf   A128138KRAAEGRRLMVHHHHTT-SEEEaaaaxvbabbb
1obb_A_711obb   A7282DDVIIDADFVIHHHHTT-SEEEaaaapvxabbb
1ofu_A_861ofu   A90100SEVLEGADMVFHHHHTT-SEEEaaaapvxabbb
1oth_A_2501oth   A251261LEAAHGGNVLIHHHHTT-SEEEaaaapvxabxb
1pze_A_851pze   A8696EAALTGADCVIHHHHTT-SEEEaaaapvxabbb
1vjt_A_701vjt   A7181DEAIDGADFIIHHHHTT-SEEEaaaapvxabbx
2cmd_*_642cmd   -6474TPALEGADVVLHHHHTT-SEEEaaaapvxabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d5c_A_771d5c   A     MSESELENOMETHIONINE Y - 91
1j5v_A_1201j5v   A     MSESELENOMETHIONINE G - 126
1j5v_A_1201j5v   A     MSESELENOMETHIONINE R - 128
1j5v_A_1201j5v   A     MSESELENOMETHIONINE F - 132
1j5v_A_1201j5v   A     MSESELENOMETHIONINE S - 133
1n3l_A_71n3l   A     GOLGLYCEROL H - 12
1n3l_A_71n3l   A     GOLGLYCEROL R - 16
1n3l_A_71n3l   A     GOLGLYCEROL N - 17
1n8y_C_171n8y   C     NAGN-ACETYL-D-GLUCOSAMINE Q - 32
1obb_A_711obb   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 71
1ofu_A_861ofu   A     GDPGUANOSINE-5'-DIPHOSPHATE T - 103
1ofu_A_861ofu   A     GDPGUANOSINE-5'-DIPHOSPHATE G - 104
1vjt_A_701vjt   A     MSESELENOMETHIONINE L - 70
1vjt_A_701vjt   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 70
1vjt_A_701vjt   A     MSESELENOMETHIONINE D - 71
1vjt_A_701vjt   A     MSESELENOMETHIONINE E - 72
1vjt_A_701vjt   A     MSESELENOMETHIONINE A - 73
1vjt_A_701vjt   A     MSESELENOMETHIONINE I - 74
1vjt_A_701vjt   A     MSESELENOMETHIONINE D - 75
1vjt_A_701vjt   A     MSESELENOMETHIONINE G - 76
1vjt_A_701vjt   A     MSESELENOMETHIONINE A - 77
1vjt_A_701vjt   A     MSESELENOMETHIONINE D - 78
1vjt_A_701vjt   A     MSESELENOMETHIONINE F - 79
1vjt_A_701vjt   A     MSESELENOMETHIONINE I - 80
1vjt_A_701vjt   A     MSESELENOMETHIONINE I - 81
1vjt_A_701vjt   A     MSESELENOMETHIONINE N - 82
1vjt_A_701vjt   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE N - 82
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ofu_A_861ofu   A AC1GDP BINDING SITE FOR CHAIN AG - 104

Clusters included in this Subclass
CLUSTER: HE.4.30