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Information on SUBCLASS 5.10.1
Subclass Accession number: 5772
Subclass: 5.10.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 14

Average sequence ID (%) : 10.7 +/- 12.9
Average RMSD (Å) : 1.000 +/- 0.215

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXcXXXXhh
(φψ)-conformation: aalbpbpbb
Pattern: xx[enqrs]xx[aknqs]xxx[DGNR]x[dehpqrs]xx[fltvy]xx
Conservation:-0.239-0.4040.7660.060-0.9100.7120.032-0.548-0.3603.042-0.6650.6540.278-1.1460.531-0.891-0.912
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e9l_A_1501e9l   A165181AFEEESVEKDIPRLLLTHHHHHHHHTTS---EEEaaaaaaaaavbpxxxbb
1efv_B_1341efv   B134150TGQMTAGFLDWPQGTFAHHHHHHHHHT--EEEEEaaaaaaaaavbxbbxlx
1ek6_A_471ek6   A4864SLRRVQELTGRSVEFEEHHHHHHHHHT---EEEEaaaaaaaaavbxbxbbx
1hkk_A_1511hkk   A165181AFQQEAQTSGKERLLLSHHHHHHHHH-S---EEEaaaaaaaaavxxxxxbb
1i24_A_541i24   A5773RISRWKALTGKSIELYVHHHHHHHHH----EEEEaaaaaaaaavxbxxbbb
1l9x_A_821l9x   A92108NLSIQSFDDGDYFPVWGHHHHHHHHTT----EEEaaaaaaaaavbxbxbbb
1mnm_A_291mnm   A4662KAFELSVLTGTQVLLLVHHHHHHHHHT---EEEEaaaaaaaaalbxbbbbb
1nyt_A_161nyt   A1935IHQQFAQQLNIEHPYGRHHHHHHHHHT----EEEaaaaaaaaalbxbwbbb
1q1g_A_1321q1g   A137153TLNKCAQELNVPVFNGIHHHHHHHHTT---EEEEaaaaaaaaalbwbxbex
1qhd_A_1341qhd   A136152IENWNLQNRRQRTGFTFHHHHHHHHTT----EEEaaaaaaaaalbxbbbxb
1udb_*_2691udb   -272288VVNAFSKACGKPVNYHFHHHHHHHHHTS---EEEaaaaaaaaavbxxxbbx
1vhv_A_1411vhv   A144160NVIKANRSIDAHTLLFLHHHHHHHHTT-BB-EEEaaaaaaaaavbxbxbxb
1vhw_A_1321vhw   A137153AAEEAAKARGIDVKVGNHHHHHHHHTT---EEEEaaaaaaaaavbxxbbbx
7req_B_5217req   B530546FSSPVWHIAGIDTPQVEHHHHHHHHTT-B--EEEaaaaaaaaavxxbwbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e9l_A_1501e9l   A     GCSD-GLUCOSAMINE T - 183
1efv_B_1341efv   B     AMPADENOSINE MONOPHOSPHATE T - 134
1efv_B_1341efv   B     AMPADENOSINE MONOPHOSPHATE G - 135
1hkk_A_1511hkk   A     AMIALLOSAMIZOLINE A - 183
1hkk_A_1511hkk   A     AMIALLOSAMIZOLINE P - 185
1nyt_A_161nyt   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE S - 16
1nyt_A_161nyt   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE H - 20
1nyt_A_161nyt   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE Y - 33
1q1g_A_1321q1g   A     MTI3,4-DIHYDROXY-2-[(METHYLSULFANYL)METHYL]-5-(4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)PYRROLIDINIUM S - 157
1qhd_A_1341qhd   A     CACALCIUM ION E - 134
1qhd_A_1341qhd   A     CACALCIUM ION Q - 142
1qhd_A_1341qhd   A     CACALCIUM ION T - 148
1qhd_A_1341qhd   A     CACALCIUM ION F - 150
1qhd_A_1341qhd   A     CACALCIUM ION T - 151
1qhd_A_1341qhd   A     CACALCIUM ION F - 152
1qhd_A_1341qhd   A     ZNZINC ION H - 153
1qhd_A_1341qhd   A     CACALCIUM ION H - 153
1udb_*_2691udb   *     UFGURIDINE-5'-DIPHOSPHATE-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE V - 269
1vhv_A_1411vhv   A     MSESELENOMETHIONINE V - 143
1vhv_A_1411vhv   A     MSESELENOMETHIONINE I - 146
1vhv_A_1411vhv   A     MSESELENOMETHIONINE K - 147
1vhv_A_1411vhv   A     MSESELENOMETHIONINE T - 156
1vhv_A_1411vhv   A     MSESELENOMETHIONINE L - 157
1vhv_A_1411vhv   A     MSESELENOMETHIONINE L - 158
1vhv_A_1411vhv   A     MSESELENOMETHIONINE F - 159
1vhv_A_1411vhv   A     MSESELENOMETHIONINE L - 160
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1hkk_A_1511hkk   A AC3AMI BINDING SITE FOR CHAIN AA - 183
1qhd_A_1341qhd   A ZNBTHE ZINC SITS ON A THREE-FOLD AXIS. THE ZINC BINDING SITE FORMED BY THREE SYMMETRICALLY-RELATED PLUS ONE WATER MOLECULE ON THE THREE-FOLD AXIS.H - 153

Clusters included in this Subclass
CLUSTER: HE.4.123
CLUSTER: HE.5.73
CLUSTER: HE.6.117
CLUSTER: HE.7.139