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Information on SUBCLASS 2.3.5
Subclass Accession number: 6106
Subclass: 2.3.5 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 32

Average sequence ID (%) : 12.2 +/- 14.3
Average RMSD (Å) : 0.506 +/- 0.154

Consensus geometry
d (Å): 5 delta (°): 45-90 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XXcpXX
(φψ)-conformation: bbeabb
Pattern: xxxxx[ADEGKNR][deknpqrst]xxxx
Conservation:-0.405-0.465-0.227-0.140-0.3822.7910.674-0.269-0.648-0.123-0.806
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ass_*_1301ass   -136146EERKIGDDRMTEEEEETTEEEEbxbbxeaxbbb
1bxo_A_1921bxo   A196206DSYTAGSQSGDEEEEETTEEEEabbbbeabbbx
1cd0_A_841cd0   A8898CQSYDARNVVFEEEEETTEEEExbbbbeaxxbb
1chd_*_2331chd   -235245ELARSGANYQIEEEEETTEEEEbxbbbeabxbx
1cy9_A_4061cy9   A413423LTVGAGDFRLKEEEEETTEEEEbbbbbeabbbb
1dj0_A_1751dj0   A182192NVTRHGPYVVVEEEEETTEEEEbbbxbeaxbbb
1ek0_A_421ek0   A4757QRVTINEHTVKEEEEETTEEEEbbbxbeaxbbb
1f42_A_1521f42   A155165AERVRGDNKEYEEEEETTEEEEbbbbbeaxbbb
1fjr_A_1631fjr   A168178LTFADGNATSIEEEE-SSSEEEbxbxbGabbbb
1h4r_A_621h4r   A6474LQYTIKDTVAWEEEEETTEEEEbbbbbeabxbb
1ibq_A_161ibq   A1828TPVTVGKSTLHEEEEEBTEEEEbwbxbeaxxbb
1iqq_A_1521iqq   A154164KCQKKGTTTELEEEEETTEEEEbbbbbeabbbx
1j31_A_821j31   A8797TAEKSGNYLYNEEEEETTEEEEbxbxbeabbbx
1jmx_A_2371jmx   A240250GNVKVGDANLREEEEETTEEEEbbbxbeabxbx
1jvn_A_1671jvn   A169179AKAKYGSEEFIEEEEETTEEEEbxbbbeaxxbx
1k8k_C_761k8k   C7888VWTLKGRTWKPEEEEETTEEEEbbbxbeabxbx
1k9i_A_3561k9i   A356366CAEFSGNGWNDEEEEETTEEEEbbbxbeabbbx
1k9j_A_3681k9j   A368378CAEFSGSGWNDEEEEETTEEEEbxbxbeabbbx
1kqw_A_811kqw   A8595LVKWDGDKLVCEEEEETTEEEEbbbxbeabxbb
1mkm_A_961mkm   A98108LILKDGFEGVYEEEE-SSEEEEbbxxbeabbbx
1o6v_A_4681o6v   A475485QPVTIGKGTTTEEEEETTEEEEbwbbbeaxbbb
1oaq_L_641oaq   L6575SGSLIGNKAALEEEEETTEEEEbbbbbeabxbb
1p30_A_1821p30   A184194QIGVEGQTPKYEEEEETTEEEExaebxeaxwbx
1q0r_A_31q0r   A414RIVPSGDVELWEEEEETTEEEEbxbwbeabbbx
1qj8_A_1211qj8   A128138EQSRIRSVDVGEEEEETTEEEEbbbbbeaxbbb
1r2q_A_551r2q   A6070QTVCLDDTTVKEEEEETTEEEEbbbxbeabxbx
1ryb_A_461ryb   A4959GIGSIGEVPVLEEEEETTEEEEbbbbbeaxwbb
1sgv_A_1491sgv   A157167AARRRDQLIDIEEEEETTEEEEbbbxbeabbxb
1usp_A_781usp   A8494GLQKAGLAFALEEEEETTEEEEbxbxbeaxbbx
1vca_A_681vca   A7181CTATCESRKLEEEEEETTEEEEbbbbbeaxbbb
2hft_*_1312hft   -132142TLVRRNNTFLSEEEEETTEEEEbaxbbeabbxx
7fab_L_797fab   L8393CQSYDRSLRVFEEEEETTEEEExbbbbeaxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bxo_A_1921bxo   A     PP7METHYL CYCLO[(2S)-2-[[(1R)-1-(N-(L-N-(3-METHYLBUTANOYL)VALYL-L-ASPARTYL)AMINO)-3-METHYLBUTYL] HYDROXYPHOSPHINYLOXY]-3-(3-AMINOMETHYL)PHENYLPROPANOATE I - 211
1ek0_A_421ek0   A     NINICKEL (II) ION I - 51
1ek0_A_421ek0   A     GDPGUANOSINE-5'-DIPHOSPHATE I - 51
1ek0_A_421ek0   A     NINICKEL (II) ION N - 52
1ek0_A_421ek0   A     GDPGUANOSINE-5'-DIPHOSPHATE N - 52
1ek0_A_421ek0   A     NINICKEL (II) ION E - 53
1ek0_A_421ek0   A     GDPGUANOSINE-5'-DIPHOSPHATE E - 53
1ek0_A_421ek0   A     NINICKEL (II) ION H - 54
1ek0_A_421ek0   A     GDPGUANOSINE-5'-DIPHOSPHATE H - 54
1ek0_A_421ek0   A     MHOS-OXYMETHIONINE W - 61
1ek0_A_421ek0   A     MGMAGNESIUM ION D - 62
1ek0_A_421ek0   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER D - 62
1ek0_A_421ek0   A     MGMAGNESIUM ION T - 63
1ek0_A_421ek0   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER T - 63
1fjr_A_1631fjr   A     PBLEAD (II) ION T - 169
1fjr_A_1631fjr   A     NAGN-ACETYL-D-GLUCOSAMINE R - 179
1fjr_A_1631fjr   A     NAGN-ACETYL-D-GLUCOSAMINE I - 180
1fjr_A_1631fjr   A     NAGN-ACETYL-D-GLUCOSAMINE A - 181
1ibq_A_161ibq   A     MANALPHA-D-MANNOSE G - 23
1ibq_A_161ibq   A     MANALPHA-D-MANNOSE K - 24
1ibq_A_161ibq   A     ZNZINC ION T - 26
1ibq_A_161ibq   A     ZNZINC ION L - 27
1ibq_A_161ibq   A     ZNZINC ION H - 28
1ibq_A_161ibq   A     ZNZINC ION D - 32
1j31_A_821j31   A     MSESELENOMETHIONINE I - 83
1j31_A_821j31   A     MSESELENOMETHIONINE A - 99
1j31_A_821j31   A     MSESELENOMETHIONINE V - 102
1j31_A_821j31   A     MSESELENOMETHIONINE G - 103
1k9i_A_3561k9i   A     CACALCIUM ION C - 356
1k9i_A_3561k9i   A     MANALPHA-D-MANNOSE E - 358
1k9i_A_3561k9i   A     NAGN-ACETYL-D-GLUCOSAMINE F - 359
1k9i_A_3561k9i   A     NAGN-ACETYL-D-GLUCOSAMINE S - 360
1k9i_A_3561k9i   A     MANALPHA-D-MANNOSE S - 360
1k9i_A_3561k9i   A     NAGN-ACETYL-D-GLUCOSAMINE G - 361
1k9i_A_3561k9i   A     MANALPHA-D-MANNOSE G - 361
1k9i_A_3561k9i   A     NAGN-ACETYL-D-GLUCOSAMINE N - 362
1k9i_A_3561k9i   A     MANALPHA-D-MANNOSE N - 362
1k9i_A_3561k9i   A     MANALPHA-D-MANNOSE G - 363
1k9i_A_3561k9i   A     MANALPHA-D-MANNOSE N - 365
1k9i_A_3561k9i   A     CACALCIUM ION N - 365
1k9i_A_3561k9i   A     MANALPHA-D-MANNOSE D - 366
1k9i_A_3561k9i   A     CACALCIUM ION D - 366
1k9i_A_3561k9i   A     MANALPHA-D-MANNOSE D - 367
1k9i_A_3561k9i   A     CACALCIUM ION D - 367
1k9j_A_3681k9j   A     CACALCIUM ION C - 368
1k9j_A_3681k9j   A     MANALPHA-D-MANNOSE E - 370
1k9j_A_3681k9j   A     NAGN-ACETYL-D-GLUCOSAMINE F - 371
1k9j_A_3681k9j   A     NAGN-ACETYL-D-GLUCOSAMINE S - 372
1k9j_A_3681k9j   A     MANALPHA-D-MANNOSE S - 372
1k9j_A_3681k9j   A     NAGN-ACETYL-D-GLUCOSAMINE G - 373
1k9j_A_3681k9j   A     MANALPHA-D-MANNOSE G - 373
1k9j_A_3681k9j   A     NAGN-ACETYL-D-GLUCOSAMINE S - 374
1k9j_A_3681k9j   A     MANALPHA-D-MANNOSE S - 374
1k9j_A_3681k9j   A     MANALPHA-D-MANNOSE G - 375
1k9j_A_3681k9j   A     MANALPHA-D-MANNOSE N - 377
1k9j_A_3681k9j   A     CACALCIUM ION N - 377
1k9j_A_3681k9j   A     MANALPHA-D-MANNOSE D - 378
1k9j_A_3681k9j   A     CACALCIUM ION D - 378
1k9j_A_3681k9j   A     MANALPHA-D-MANNOSE N - 379
1k9j_A_3681k9j   A     CACALCIUM ION N - 379
1mkm_A_961mkm   A     ZNZINC ION Y - 108
1qj8_A_1211qj8   A     PCLPLATINUM(II) DI-CHLORIDE V - 121
1r2q_A_551r2q   A     MGMAGNESIUM ION D - 75
1r2q_A_551r2q   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER D - 75
1r2q_A_551r2q   A     MGMAGNESIUM ION T - 76
1r2q_A_551r2q   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER T - 76
1usp_A_781usp   A     MSESELENOMETHIONINE I - 79
1usp_A_781usp   A     MSESELENOMETHIONINE L - 85
1usp_A_781usp   A     GOLGLYCEROL K - 87
1usp_A_781usp   A     GOLGLYCEROL F - 92
1usp_A_781usp   A     MSESELENOMETHIONINE L - 98
1usp_A_781usp   A     MSESELENOMETHIONINE E - 99
1usp_A_781usp   A     MSESELENOMETHIONINE G - 100
1usp_A_781usp   A     MSESELENOMETHIONINE H - 101

Clusters included in this Subclass
CLUSTER: HA.2.25
CLUSTER: HA.2.74
CLUSTER: HA.3.39