ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.11.1

Subclass Accession number: 6203
Subclass: 3.11.1

Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 19

Average sequence ID (%) : 20.9 +/- 22.4
Average RMSD (Å) : 0.858 +/- 0.096

Consensus geometry

d (Å): 5

delta (°): 45-90

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	XXpXGXX
(φψ)-conformation:	bbplebb

Pattern:	[agikltv]	x	[eknqsty]	x	[GY]	x	x
Conservation:	-0.392	-0.455	-0.244	-0.352	2.258	-0.519	-0.295

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bj7_*_77	1bj7	-	80	86	LEFYGTN	EESSSEE	bxblexb
1cb8_A_497	1cb8	A	498	504	ISTAGKT	EETTEEE	bbxvebx
1df9_A_117	1df9	A	117	123	KTNAGTI	EESSSEE	bxbvexb
1dzk_A_77	1dzk	A	80	86	VNYAGNN	EESSSEE	bxblebb
1e5p_A_72	1e5p	A	74	80	TQFEGNN	EESSSEE	bxblexb
1ew3_A_98	1ew3	A	101	107	LNYDGYN	EESSSEE	bxblebb
1gm6_A_82	1gm6	A	85	91	VAYYGEN	EESSSEE	bxblexb
1gt1_A_79	1gt1	A	81	87	ADYEGQN	EESSSEE	bbblebb
1i8a_A_116	1i8a	A	122	128	LIEGGYI	EETTEEE	xbxvebb
1j3q_A_171	1j3q	A	174	180	VEENGKV	EESSSEE	bbbvexb
1j58_A_58	1j58	A	59	65	LEKGGYA	EETTEEE	xbxgebb
1l0w_A_350	1l0w	A	354	360	VEEGGFS	EETTEEE	bbxvebb
1m56_B_134	1m56	B	140	146	GYQWYWG	EETTEEE	xbpvebb
1n1t_A_450	1n1t	A	452	458	RVPNGLK	EETTEEE	xbpvebb
1nw1_A_141	1nw1	A	144	150	IFSGGRL	EETTEEE	bbxvebb
1plq_*_235	1plq	-	240	246	DLKSGFL	EETTEEE	xbxvebb
1qy1_A_80	1qy1	A	82	88	VTYDGFN	EESSSEE	bxblebb
1v54_B_95	1v54	B	101	107	GHQWYWS	EETTEEE	xbxvebb
2a2u_A_80	2a2u	A	82	88	VEYDGGN	EESSSEE	bxblexb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1dzk_A_77	1dzk	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	V - 80
1dzk_A_77	1dzk	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	Y - 82
1dzk_A_77	1dzk	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	N - 86
1dzk_A_77	1dzk	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	F - 88
1e5p_A_72	1e5p	A	MSESELENOMETHIONINE	Y - 72
1e5p_A_72	1e5p	A	MSESELENOMETHIONINE	E - 77
1e5p_A_72	1e5p	A	MSESELENOMETHIONINE	G - 78
1e5p_A_72	1e5p	A	MSESELENOMETHIONINE	N - 79
1e5p_A_72	1e5p	A	MSESELENOMETHIONINE	N - 80
1e5p_A_72	1e5p	A	MSESELENOMETHIONINE	F - 82
1e5p_A_72	1e5p	A	MSESELENOMETHIONINE	P - 84
1gm6_A_82	1gm6	A	GOLGLYCEROL	V - 85
1gm6_A_82	1gm6	A	GOLGLYCEROL	Y - 87
1gm6_A_82	1gm6	A	GOLGLYCEROL	N - 91
1gm6_A_82	1gm6	A	GOLGLYCEROL	F - 93
1gt1_A_79	1gt1	A	ANCANTHRACEN-1-YLAMINE	A - 81
1gt1_A_79	1gt1	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	Y - 83
1gt1_A_79	1gt1	A	ANCANTHRACEN-1-YLAMINE	Y - 83
1gt1_A_79	1gt1	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	N - 87
1gt1_A_79	1gt1	A	ANCANTHRACEN-1-YLAMINE	N - 87
1gt1_A_79	1gt1	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	F - 89
1gt1_A_79	1gt1	A	ANCANTHRACEN-1-YLAMINE	F - 89
1i8a_A_116	1i8a	A	CACALCIUM ION	E - 130
1j58_A_58	1j58	A	MSESELENOMETHIONINE	Y - 64
1j58_A_58	1j58	A	MSESELENOMETHIONINE	A - 65
1m56_B_134	1m56	B	CUCOPPER (II) ION	Y - 141
1m56_B_134	1m56	B	CUCOPPER (II) ION	Q - 142
1m56_B_134	1m56	B	CUCOPPER (II) ION	W - 143
1m56_B_134	1m56	B	PEHDI-STEAROYL-3-SN-PHOSPHATIDYLETHANOLAMINE	Y - 144
1m56_B_134	1m56	B	CUCOPPER (II) ION	W - 145
1plq_*_235	1plq	*	HGMERCURY (II) ION	F - 248
1qy1_A_80	1qy1	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	V - 82
1qy1_A_80	1qy1	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	Y - 84
1qy1_A_80	1qy1	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	N - 88
1qy1_A_80	1qy1	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	F - 90
1qy1_A_80	1qy1	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	T - 91
1v54_B_95	1v54	B	CUCOPPER (II) ION	H - 102
1v54_B_95	1v54	B	CUADINUCLEAR COPPER ION	H - 102
1v54_B_95	1v54	B	CUCOPPER (II) ION	W - 104
1v54_B_95	1v54	B	CUADINUCLEAR COPPER ION	W - 104
1v54_B_95	1v54	B	CUCOPPER (II) ION	W - 106
1v54_B_95	1v54	B	CUADINUCLEAR COPPER ION	W - 106

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gm6_A_82	1gm6	A	CAVODOUR-BINDING CAVITY	V - 85
1gm6_A_82	1gm6	A	CAVODOUR-BINDING CAVITY	F - 93
1gt1_A_79	1gt1	A	ANAANC BINDING SITE FOR CHAIN A	Y - 83
1gt1_A_79	1gt1	A	PRZPRZ BINDING SITE FOR CHAIN A	F - 89

Clusters included in this Subclass

CLUSTER: HA.1.33

CLUSTER: HA.2.28