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Information on SUBCLASS 4.1.7
Subclass Accession number: 6242
Subclass: 4.1.7 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 27

Average sequence ID (%) : 11.6 +/- 15.9
Average RMSD (Å) : 0.496 +/- 0.261

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XpXXXchX
(φψ)-conformation: bbaaalbb
Pattern: x[dhnrsty]x[adegkrst]x[DGKNQRST][fgilvy]x
Conservation:-0.6770.0110.064-0.378-0.9832.0100.810-0.857
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8d_*_2931a8d   -295302TNGKLNIYEETTTTEEbbaaalbb
1arb_*_1031arb   -108115TYATSDFTEETTTTEEbbaaalbb
1bd2_E_881bd2   E95102SYPGGGFYEEGGGTEEbbaaagxa
1cu1_A_731cu1   A7683TNVDQDLVEETTTTEEbbaaavbb
1dvp_A_1941dvp   A197204PLPKYGIEEEGGGTEExbaaavba
1ewq_A_1431ewq   A148155LDVSTGEFEETTTTEEbbaaavpb
1f0i_A_5051f0i   A505512VDYARGICEEGGGTEEbbaaavxb
1frd_*_21frd   -815INKKQDIDEETTTTEEbbaaalbb
1h8d_H_601h8d   H6067LYPPWDKNEEGGGTEEbbaaalxb
1i1q_B_1521i1q   B157164RHDADRVCEETTTTEEbbaaavbb
1i7q_B_1551i7q   B160167RDDRRRVCEETTTTEEbbaaalbb
1iby_A_601iby   A6370SIDAFGVQEEGGGTEEbbaaalxb
1itk_A_5811itk   A581588VDGVRNYIEETTTTEEbbaaalbb
1kl9_A_711kl9   A7582VDKEKGYIEETTTTEEbbaaavxb
1l3a_A_2001l3a   A208215QNKLINLDEEGGGTEEbbaaalxb
1lc0_A_1831lc0   A191198ERKEDQYMEEGGGTEEbbaaalbb
1leh_A_141leh   A1926QDEASGLKEETTTTEEbbaaavxb
1mwv_A_5981mwv   A598605ADGFRNYLEEGGGTEEbbaaalbb
1nlq_A_481nlq   A5461NTPKDSVQEEGGGTEEbbaaalxb
1obd_A_2111obd   A222229IDEKTNEIEETTTTEEbxaaalbx
1olz_A_2611olz   A261268SRPDSGLVEEGGGTEEbbaaavxb
1st0_A_481st0   A5562ESARDKIIEETTTTEEbbaaavbb
1tfr_*_1951tfr   -196203GDKKDNVAEEGGGTEEebaaavxb
1ub2_A_5721ub2   A572579HDAIATGSEEGGGTEEbbaaalbb
1ux6_A_10891ux6   A10961103HRPKTGFIEETTTTEEbbaaavxb
1v54_B_1611v54   B164171AVPSLGLKEEGGGTEEbbaaavbb
1vfy_A_2061vfy   A209216PLPDLGIYEEGGGTEExbaaavba
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dvp_A_1941dvp   A     CITCITRIC ACID R - 208
1dvp_A_1941dvp   A     ZNZINC ION V - 209
1iby_A_601iby   A     CUCOPPER (II) ION E - 60
1iby_A_601iby   A     HEZHEXANE-1,6-DIOL E - 60
1iby_A_601iby   A     CUCOPPER (II) ION G - 61
1kl9_A_711kl9   A     ZNZINC ION K - 77
1kl9_A_711kl9   A     MSESELENOMETHIONINE I - 82
1kl9_A_711kl9   A     MSESELENOMETHIONINE D - 83
1kl9_A_711kl9   A     MSESELENOMETHIONINE L - 84
1kl9_A_711kl9   A     MSESELENOMETHIONINE S - 85
1obd_A_2111obd   A     ATPADENOSINE-5'-TRIPHOSPHATE K - 217
1obd_A_2111obd   A     MGMAGNESIUM ION K - 217
1obd_A_2111obd   A     ATPADENOSINE-5'-TRIPHOSPHATE E - 219
1obd_A_2111obd   A     MGMAGNESIUM ION E - 219
1obd_A_2111obd   A     ATPADENOSINE-5'-TRIPHOSPHATE V - 232
1st0_A_481st0   A     GTG7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE R - 54
1st0_A_481st0   A     GTG7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE D - 59
1st0_A_481st0   A     GTG7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE I - 61
1st0_A_481st0   A     GTG7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE F - 63
1tfr_*_1951tfr   *     MGMAGNESIUM ION D - 200
1v54_B_1611v54   B     CUCOPPER (II) ION H - 161
1v54_B_1611v54   B     CUADINUCLEAR COPPER ION H - 161
1v54_B_1611v54   B     CUCOPPER (II) ION S - 162
1v54_B_1611v54   B     MGMAGNESIUM ION S - 162
1v54_B_1611v54   B     CUADINUCLEAR COPPER ION S - 162
1v54_B_1611v54   B     FMEN-FORMYLMETHIONINE V - 165
1v54_B_1611v54   B     FMEN-FORMYLMETHIONINE S - 167
1v54_B_1611v54   B     MGMAGNESIUM ION D - 173
1vfy_A_2061vfy   A     ZNZINC ION V - 221
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1obd_A_2111obd   A AC2ATP BINDING SITE FOR CHAIN AE - 219
1vfy_A_2061vfy   A POSRKHHCR MOTIF ; PUTATIVE PI3P BINDING SITER - 220

Clusters included in this Subclass
CLUSTER: HA.3.34
CLUSTER: HA.5.27