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Information on SUBCLASS 5.12.1
Subclass Accession number: 6389
Subclass: 5.12.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 16

Average sequence ID (%) : 13.9 +/- 15.4
Average RMSD (Å) : 0.669 +/- 0.202

Consensus geometry
d (Å): 5 delta (°): 45-90 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XhcXppXXh
(φψ)-conformation: bbpaaalbb
Pattern: xx[degns][deknpqrst][dekqs][DEHKST][gknqs]x[iltvy]xx
Conservation:-0.554-0.4752.040-0.233-0.1031.2021.124-0.974-0.429-0.550-1.049
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1clc_*_941clc   -96106MFDNDTKETVYEEETTTTEEEEbxxaaalbxbb
1edh_A_1631edh   A164174TVNRDTGVISVEE-TTT-EEEEbbxaaavxxbx
1f00_I_8031f00   I804814SVDASSGQVTLEE-TTT-EEEEbbxaaavxbbx
1gqe_A_3221gqe   A325335SYVLDDSRIKDEEEGGGTEEEEbbxaaalbbbx
1hrh_A_4391hrh   A445455AANRETKLGKAEE-TTT-EEEEbbxaaavxbbb
1jb3_A_161jb3   A2737NVDPVHHTYSCEEETTTTEEEExxbaaavbbbb
1jm1_A_1971jm1   A200210DYDSSTGDIYAEE-TTT-EEEEbbxaaavxbbx
1jof_A_3261jof   A326336ITDDQEGWLEIEE-SSS-EEEEbbbaaavbbbb
1lur_A_12471lur   A12491259FWSEKSGIELSEE-TTT-EEEEbbbaaavxbbb
1msw_D_7101msw   D710720VKDKKTGEILREE-TTT--EEExbxaaavxxab
1nci_A_511nci   A5262IINPISGQLSVEE-TTT-EEEEbbxaaavxxbb
1ndm_B_3671ndm   B370380TRDTSKNQYYLEE-SSSSEEEEbbxaNavbbbb
1o6s_B_511o6s   B5262IIERETGWLKVEE-TTT-EEEEbbxaaavxxbx
1pcv_A_821pcv   A8696ALDQFSGLDFWEE-TTTSEEEEbxxaaavbbbb
1ri6_A_2901ri6   A293303AAGQKSHHISVEE-TTT-EEEEbbbaaalbbbb
1ut9_A_2571ut9   A260270GLDKDSQDYVHEEETTTTEEEExxxaaalxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gqe_A_3221gqe   A     MSESELENOMETHIONINE R - 324
1gqe_A_3221gqe   A     MSESELENOMETHIONINE Y - 326
1gqe_A_3221gqe   A     MSESELENOMETHIONINE L - 328
1gqe_A_3221gqe   A     MSESELENOMETHIONINE I - 333
1jof_A_3261jof   A     MSESELENOMETHIONINE I - 326
1jof_A_3261jof   A     MSESELENOMETHIONINE T - 327
1jof_A_3261jof   A     MSESELENOMETHIONINE D - 328
1jof_A_3261jof   A     MSESELENOMETHIONINE D - 329
1jof_A_3261jof   A     PINPIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID) E - 331
1jof_A_3261jof   A     PINPIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID) W - 333
1jof_A_3261jof   A     MSESELENOMETHIONINE E - 335
1jof_A_3261jof   A     MSESELENOMETHIONINE I - 336
1jof_A_3261jof   A     MSESELENOMETHIONINE Y - 337
1jof_A_3261jof   A     MSESELENOMETHIONINE R - 338
1jof_A_3261jof   A     MSESELENOMETHIONINE W - 339
1lur_A_12471lur   A     MSESELENOMETHIONINE L - 1247
1lur_A_12471lur   A     MSESELENOMETHIONINE R - 1248

Clusters included in this Subclass
CLUSTER: HA.4.59
CLUSTER: HA.5.163
CLUSTER: HA.5.85