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PDB code:

Information on SUBCLASS 5.1.3

Subclass Accession number: 698 Subclass: 5.1.3 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates:

Number of loops: 34 Average sequence ID (%) : 14.6 +/- 15.9 Average RMSD (Å) : 0.629 +/- 0.149 Consensus geometry d (Å): 3 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1arb_*_197	1arb	-	197	207	PIYSPEKRVLG	EEE-TTS-EEE	xbbxaavbxae
1bco_*_543	1bco	-	545	555	YCYTLDGRFIC	EEE-TTS-EEE	bxbxaavxxab
1dmg_A_3	1dmg	A	5	15	DLLNVKGEKVG	EEE-TTS-EEE	xbbbaavxxae
1dy9_A_103	1dy9	A	105	115	YLVTRHADVIP	EEE-TT--EEE	bxxxaalxbbw
1f89_A_109	1f89	A	114	124	IIFNEDGKLID	EEE-TTS-EEE	xbbbaagxxab
1fjr_A_36	1fjr	A	41	51	FRILPDDSKQK	EEE-TTS-EEE	bbxbaavxbbx
1fjs_A_30	1fjs	A	32	42	LLINEENEGFC	EEE-TT--EEE	bxbxaavxxab
1g8l_A_346	1g8l	A	353	363	LQRNADGELEV	EEE-TTS-EEE	xbxxaalbxbx
1gx5_A_369	1gx5	A	372	382	VAHDASGKRVY	EEE-TTS-EEE	bbbxaavxxbx
1hqz_1_32	1hqz	1	35	45	ISPNAKKEYEP	EEE-TTS-EEE	bbxxaavxxbp
1iq8_A_543	1iq8	A	545	555	LVVNENDELLA	EEE-TT--EEE	bxbxaavxpab
1itw_A_362	1itw	A	362	372	KMWGPDGKLHD	EEE-TTSSEEE	bbxbaavbxbx
1j1t_A_121	1j1t	A	127	137	RLRNTSGNEEK	EEEBTTS-EEE	bbxxaavbxbb
1jet_A_48	1jet	A	48	58	LISDVEGHPSP	EEE-TT--EEE	bbxxaavxwbp
1jj2_C_2	1jj2	C	4	14	TIYDLDGNTDG	EEE-TTS-EEE	xxbxaavxpbe
1jlr_A_83	1jlr	A	87	97	EVTTPLDVSYH	EEE-TTS-EEE	bbbxaavbxbx
1ju2_A_230	1ju2	A	234	244	IYRDSNGTPHQ	EEE-TTS-EEE	bbbxaavxwbb
1lml_*_226	1lml	-	230	240	CQTFSDGHPAV	EEE-TTS-EEE	abbxaavxwab
1mnn_A_297	1mnn	A	299	309	ELALKNGSKGM	EEE-SSSSEEE	xbxpaavxxpb
1nv8_A_263	1nv8	A	264	274	FLKDSAGKYRF	EEE-TTSSEEE	bbxxaavbxab
1o1z_A_31	1o1z	A	36	46	VRLSKDGKVVV	EEE-TTS-EEE	bbbxaavxxbx
1pn0_A_82	1pn0	A	86	96	YNPDENGHIRR	EEE-TTS-EEE	bbxxaavbxbx
1pvm_A_154	1pvm	A	156	166	PVYNEKGEIKV	EEE-TTS-EEE	xbbbaavxxab
1qau_A_104	1qau	A	109	119	TTFTGDGTPKT	EEE-TT--EEE	bbbxaavxwbx
1qy6_A_172	1qy6	A	172	182	PVFNEKNEVIG	EEE-TTS-EEE	xbbxaavbxab
1rvk_A_11	1rvk	A	17	27	RHSDSAGHAHP	EEE-TTS-EEE	xbbxaavxxbx
1s3i_A_276	1s3i	A	278	288	ILFGNDDRMLL	EEE-TT--EEE	xbbxaaUxbbb
1sgv_A_264	1sgv	A	265	275	AACDADGRVIA	EEE-TTS-EEE	xxbxaavxxab
1sox_A_237	1sox	A	243	253	LDADPGGAPYG	EEE-TT--EEE	axbxaagxwxb
1st9_A_141	1st9	A	143	153	FLINPEGKVVK	EEE-TTSEEEE	bbbxaavbxab
1svp_A_115	1svp	A	117	127	DVKNEDGDVIG	EEE-TTS-EEE	xbbxaavxxae
1svp_A_218	1svp	A	218	228	PIMDNSGRVVA	EEE-TTS-EEE	xbbbaavxxab
1ut9_A_240	1ut9	A	242	252	QLKNAAGVVVL	EEE-TTS-EEE	bxbxaavxxab
2por_*_19	2por	-	32	42	SGTTDSGLEFG	EEE-TT--EEE	bbbxaavxbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1gx5_A_369	1gx5	A	MSESELENOMETHIONINE	L - 384
1j1t_A_121	1j1t	A	CACALCIUM ION	I - 121
1j1t_A_121	1j1t	A	CACALCIUM ION	F - 122
1j1t_A_121	1j1t	A	CACALCIUM ION	D - 123
1jlr_A_83	1jlr	A	GTPGUANOSINE-5'-TRIPHOSPHATE	F - 83
1jlr_A_83	1jlr	A	GTPGUANOSINE-5'-TRIPHOSPHATE	F - 101
1nv8_A_263	1nv8	A	MEQN5-METHYLGLUTAMINE	R - 273
1pvm_A_154	1pvm	A	HGMERCURY (II) ION	L - 154
1pvm_A_154	1pvm	A	HGMERCURY (II) ION	C - 169
1rvk_A_11	1rvk	A	MSESELENOMETHIONINE	F - 11
1rvk_A_11	1rvk	A	MSESELENOMETHIONINE	R - 17
1rvk_A_11	1rvk	A	MSESELENOMETHIONINE	H - 18
1rvk_A_11	1rvk	A	MSESELENOMETHIONINE	D - 20
1rvk_A_11	1rvk	A	MSESELENOMETHIONINE	H - 24
1rvk_A_11	1rvk	A	MSESELENOMETHIONINE	A - 25
1rvk_A_11	1rvk	A	MSESELENOMETHIONINE	H - 26
1rvk_A_11	1rvk	A	MSESELENOMETHIONINE	P - 27
1rvk_A_11	1rvk	A	MSESELENOMETHIONINE	Q - 35
1sox_A_237	1sox	A	MTEPHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7, 8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER	E - 241
1sox_A_237	1sox	A	MTEPHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7, 8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER	G - 242
1sox_A_237	1sox	A	MTEPHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7, 8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER	L - 243
1sox_A_237	1sox	A	MTEPHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7, 8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER	D - 244
1sox_A_237	1sox	A	MTEPHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7, 8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER	Y - 252
1st9_A_141	1st9	A	EGLETHYLENE GLYCOL	F - 143
1st9_A_141	1st9	A	EGLETHYLENE GLYCOL	I - 145
1st9_A_141	1st9	A	EGLETHYLENE GLYCOL	E - 148
1st9_A_141	1st9	A	EGLETHYLENE GLYCOL	G - 149
1st9_A_141	1st9	A	EGLETHYLENE GLYCOL	K - 150
1st9_A_141	1st9	A	EGLETHYLENE GLYCOL	V - 151
1st9_A_141	1st9	A	EGLETHYLENE GLYCOL	K - 153
1st9_A_141	1st9	A	EGLETHYLENE GLYCOL	V - 154
2por_*_19	2por	*	OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL	W - 19
2por_*_19	2por	*	OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL	N - 20
2por_*_19	2por	*	OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL	F - 21

Clusters included in this Subclass

CLUSTER: HA.4.49

CLUSTER: HA.5.13

CLUSTER: HA.5.165

CLUSTER: HA.6.12

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