ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.6.2

Subclass Accession number: 7213
Subclass: 2.6.2

PSSM

Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 8

Average sequence ID (%) : 26.5 +/- 26.0
Average RMSD (Å) : 0.412 +/- 0.210

Consensus geometry

d (Å): 7

delta (°): 90-135

theta (°): 90-135

rho (°): 0-45

Consensus Sequence:	XGXphh
(φψ)-conformation:	beplaa

Pattern:	[FIVW]	x	[G]	x	[GNRS]	[AIV]	[AGIV]	[AEKQR]	x	[agikv]	[AQR]	x	[AGLM]	[AGILV]
Conservation:	0.033	-0.598	3.052	-0.916	0.281	0.389	-0.180	-0.042	-0.612	-0.755	0.731	-0.712	-0.249	-0.422

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ehw_A_73	1ehw	A	78	91	WEGYNVVRASRAMI	EESTTHHHHHHHHH	bbexlaaaaaaaaa
1j9a_A_107	1j9a	A	107	120	ICGNSIAQDKRFLV	EEESSHHHHHHHHH	xbeblaaaaaaaaa
1jeh_A_420	1jeh	A	425	438	IIGPNAGEMIAEAG	EEETTHHHHHHHHH	bxepUaaaaaaaaa
1k44_A_71	1k44	A	76	89	VEGTRAIAAVRQLA	EEETTHHHHHHHHH	xbexlaaaaaaaaa
1npk_*_77	1npk	-	82	95	FEGKGVVASARLMI	EESTTHHHHHHHHH	bbexvaaaaaaaaa
1nsq_A_75	1nsq	A	79	92	WEGLNVVKTGRQML	EESTTHHHHHHHHH	bbeplaaaaaaaaa
1nue_A_73	1nue	A	78	91	WEGLNVVKTGRVML	EE-TTHHHHHHHHH	bbexlaaaaaaaaa
3lad_A_413	3lad	A	418	431	VIGPSAAELVQQGA	EEETTHHHHHHHHH	bbeplaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1j9a_A_107	1j9a	A	MSESELENOMETHIONINE	Q - 114
1j9a_A_107	1j9a	A	MSESELENOMETHIONINE	D - 115
1j9a_A_107	1j9a	A	MSESELENOMETHIONINE	F - 118
1j9a_A_107	1j9a	A	MSESELENOMETHIONINE	L - 119
1j9a_A_107	1j9a	A	MSESELENOMETHIONINE	V - 120
1j9a_A_107	1j9a	A	MSESELENOMETHIONINE	K - 121
1nsq_A_75	1nsq	A	PHSPHOSPHONO GROUP	R - 89
1nue_A_73	1nue	A	GDPGUANOSINE-5'-DIPHOSPHATE	R - 88
1nue_A_73	1nue	A	MGMAGNESIUM ION	R - 88

Clusters included in this Subclass

CLUSTER: EH.1.92

CLUSTER: EH.2.74