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PDB code:

Information on SUBCLASS 5.2.2

Subclass Accession number: 7928 Subclass: 5.2.2 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates:

Number of loops: 26 Average sequence ID (%) : 17.3 +/- 21.5 Average RMSD (Å) : 0.812 +/- 0.280 Consensus geometry d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ab4_*_145	1ab4	-	145	156	FVDNYDGTEKIP	EEE-TTSSSEEE	bbxxaavabbbx
1bbz_A_24	1bbz	A	28	39	LGYNHNGEWCEA	EEE-TTSSEEEE	aebxaavabbxb
1c24_A_214	1c24	A	214	225	IRTMKDGWTVKT	EEE-TTSS-EEE	bbxxaavapbbx
1cjx_A_198	1cjx	A	203	214	AMSAPDGMIRIP	EEE-TTSS-EEE	xxbxaavaxbbx
1crk_A_211	1crk	A	212	223	IWHNNDKTFLVW	EEEETTS-EEEE	bbbxaalabbbb
1cru_A_407	1cru	A	410	421	VIASPDGNVLYV	EEE-TTSS-EEE	bbbxaavabbbb
1eaf_*_486	1eaf	-	486	497	SSLAPSGQALIR	EEE-TTSS-EEE	bbxxaavabbbx
1g2l_B_281	1g2l	B	281	292	YTLADNGKACIP	EEE-TTSS-EEE	bbxxaavaxbxx
1g6s_A_63	1g6s	A	64	75	YTLSADRTRCEI	EEE-TTS--EEE	bbbxaavabbbb
1gtk_A_256	1gtk	A	262	273	LVGAPDGSQIIR	EEE-TTSS-EEE	bbbxaavabbxb
1h8g_A_282	1h8g	A	283	294	FIQSADGTGWYY	EEE-SSSS-EEE	bbxxaavabbbb
1ivy_A_73	1ivy	A	73	84	FLVQPDGVTLEY	EEE-TTSS-EEE	bbxbaavaxbbp
1k2y_X_237	1k2y	X	239	250	LAFDGDGDRVGV	EEE-TTSS-EEE	bbxxaavabbxb
1k32_A_344	1k32	A	346	357	FIQDVSGTYVLK	EEE-TTSSSEEE	bbbxaavabbbx
1kig_L_415	1kig	L	415	426	YVLGDDSKSCVS	EEE-TTSS-EEE	bbpxaagaxbxx
1kli_L_118	1kli	L	118	129	YSLLADGVSCTP	EEE-TTSS-EEE	bbxxaavaxbbp
1lwd_A_291	1lwd	A	294	305	VLVCPDGKTIEA	EEE-TTSS-EEE	bxbxaavaxbbx
1m15_A_209	1m15	A	210	221	IFHNDAKTFLVW	EEEETTSSEEEE	bxbxaavabbbx
1n16_A_216	1n16	A	217	228	IWHNNDKTFLVW	EEEETTSSEEEE	bbbxaalabbbx
1oan_A_238	1oan	A	239	250	TFKNPHAKKQDV	EEE-TTSS--EE	bbbbaalabbbb
1qh4_A_216	1qh4	A	217	228	IWHNDNKTFLVW	EEEETTSSEEEE	bbbxaavabbbx
1qi9_A_446	1qi9	A	446	457	VYPDDDGLKLID	EEE-TTSSSEEE	bbxxaavabxbp
1qk1_A_211	1qk1	A	212	223	IWHNNEKSFLIW	EEEETTS-EEEE	bbbxaalabbbb
1rfn_B_115	1rfn	B	115	126	YRLAENQKSCEP	EEE-TTSSSEEE	bbxxaaUaxbbp
2crk_A_216	2crk	A	217	228	IWHNDNKSFLVW	EEEETTSSEEEE	bbbxaavabbbb
3pmg_A_282	3pmg	A	284	295	AAFDGDGDRNMI	EEE-TTSS-EEE	bbbxaavabbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1c24_A_214	1c24	A	MPJ(1-AMINO-3-METHYLSULFANYL-PROPYL)-PHOSPHINIC ACID	W - 221
1cjx_A_198	1cjx	A	FE2FE (II) ION	P - 214
1cjx_A_198	1cjx	A	ACTACETATE ION	P - 214
1cjx_A_198	1cjx	A	ACTACETATE ION	N - 216
1crk_A_211	1crk	A	PO4PHOSPHATE ION	W - 223
1cru_A_407	1cru	A	PQQPYRROLOQUINOLINE QUINONE	R - 408
1g6s_A_63	1g6s	A	FMTFORMIC ACID	S - 63
1g6s_A_63	1g6s	A	FMTFORMIC ACID	Y - 64
1g6s_A_63	1g6s	A	FMTFORMIC ACID	T - 65
1g6s_A_63	1g6s	A	FMTFORMIC ACID	L - 66
1g6s_A_63	1g6s	A	FMTFORMIC ACID	S - 67
1g6s_A_63	1g6s	A	FMTFORMIC ACID	R - 72
1g6s_A_63	1g6s	A	FMTFORMIC ACID	C - 73
1g6s_A_63	1g6s	A	FMTFORMIC ACID	E - 74
1h8g_A_282	1h8g	A	CHTCHOLINE ION	Y - 293
1ivy_A_73	1ivy	A	NAGN-ACETYL-D-GLUCOSAMINE	Q - 76
1ivy_A_73	1ivy	A	NAGN-ACETYL-D-GLUCOSAMINE	P - 77
1ivy_A_73	1ivy	A	NAGN-ACETYL-D-GLUCOSAMINE	D - 78
1ivy_A_73	1ivy	A	NAGN-ACETYL-D-GLUCOSAMINE	G - 79
1k2y_X_237	1k2y	X	ZNZINC ION	D - 242
1k2y_X_237	1k2y	X	TLAL(+)-TARTARIC ACID	D - 242
1k2y_X_237	1k2y	X	ZNZINC ION	G - 243
1k2y_X_237	1k2y	X	ZNZINC ION	D - 244
1k2y_X_237	1k2y	X	TLAL(+)-TARTARIC ACID	D - 244
1k2y_X_237	1k2y	X	ZNZINC ION	G - 245
1k2y_X_237	1k2y	X	ZNZINC ION	D - 246
1k2y_X_237	1k2y	X	TLAL(+)-TARTARIC ACID	D - 246
1k2y_X_237	1k2y	X	ZNZINC ION	R - 247
1k2y_X_237	1k2y	X	TLAL(+)-TARTARIC ACID	R - 247
1lwd_A_291	1lwd	A	ICTISOCITRIC ACID	S - 293
1lwd_A_291	1lwd	A	ICTISOCITRIC ACID	E - 306
1m15_A_209	1m15	A	MGMAGNESIUM ION	W - 221
1m15_A_209	1m15	A	ADPADENOSINE-5'-DIPHOSPHATE	W - 221
1qi9_A_446	1qi9	A	IODIODIDE ION	Y - 447
1qi9_A_446	1qi9	A	IODIODIDE ION	P - 448
1qi9_A_446	1qi9	A	IODIODIDE ION	D - 449
1qi9_A_446	1qi9	A	IODIODIDE ION	D - 450
1qi9_A_446	1qi9	A	IODIODIDE ION	I - 456
1qi9_A_446	1qi9	A	IODIODIDE ION	D - 457
3pmg_A_282	3pmg	A	PHSPHOSPHONO GROUP	D - 287
3pmg_A_282	3pmg	A	MGMAGNESIUM ION	D - 287
3pmg_A_282	3pmg	A	PHSPHOSPHONO GROUP	G - 288
3pmg_A_282	3pmg	A	MGMAGNESIUM ION	G - 288
3pmg_A_282	3pmg	A	PHSPHOSPHONO GROUP	D - 289
3pmg_A_282	3pmg	A	MGMAGNESIUM ION	D - 289
3pmg_A_282	3pmg	A	MGMAGNESIUM ION	G - 290
3pmg_A_282	3pmg	A	PHSPHOSPHONO GROUP	D - 291
3pmg_A_282	3pmg	A	MGMAGNESIUM ION	D - 291
3pmg_A_282	3pmg	A	PHSPHOSPHONO GROUP	R - 292
3pmg_A_282	3pmg	A	MGMAGNESIUM ION	R - 292

Clusters included in this Subclass

CLUSTER: HA.4.47

CLUSTER: HA.5.14

CLUSTER: HA.6.10

CLUSTER: HA.7.1

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