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Information on SUBCLASS 5.2.2
Subclass Accession number: 7928
Subclass: 5.2.2 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 26

Average sequence ID (%) : 17.3 +/- 21.5
Average RMSD (Å) : 0.812 +/- 0.280

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: hXXXccpXh
(φψ)-conformation: bbpaalabb
Pattern: [afilvy]xx[acdgns][adgnpv][adens][agkqrs]xxxxx
Conservation:0.371-0.613-0.939-0.054-0.2652.0861.894-0.208-0.703-0.234-0.434-0.900
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ab4_*_1451ab4   -145156FVDNYDGTEKIPEEE-TTSSSEEEbbxxaavabbbx
1bbz_A_241bbz   A2839LGYNHNGEWCEAEEE-TTSSEEEEaebxaavabbxb
1c24_A_2141c24   A214225IRTMKDGWTVKTEEE-TTSS-EEEbbxxaavapbbx
1cjx_A_1981cjx   A203214AMSAPDGMIRIPEEE-TTSS-EEExxbxaavaxbbx
1crk_A_2111crk   A212223IWHNNDKTFLVWEEEETTS-EEEEbbbxaalabbbb
1cru_A_4071cru   A410421VIASPDGNVLYVEEE-TTSS-EEEbbbxaavabbbb
1eaf_*_4861eaf   -486497SSLAPSGQALIREEE-TTSS-EEEbbxxaavabbbx
1g2l_B_2811g2l   B281292YTLADNGKACIPEEE-TTSS-EEEbbxxaavaxbxx
1g6s_A_631g6s   A6475YTLSADRTRCEIEEE-TTS--EEEbbbxaavabbbb
1gtk_A_2561gtk   A262273LVGAPDGSQIIREEE-TTSS-EEEbbbxaavabbxb
1h8g_A_2821h8g   A283294FIQSADGTGWYYEEE-SSSS-EEEbbxxaavabbbb
1ivy_A_731ivy   A7384FLVQPDGVTLEYEEE-TTSS-EEEbbxbaavaxbbp
1k2y_X_2371k2y   X239250LAFDGDGDRVGVEEE-TTSS-EEEbbxxaavabbxb
1k32_A_3441k32   A346357FIQDVSGTYVLKEEE-TTSSSEEEbbbxaavabbbx
1kig_L_4151kig   L415426YVLGDDSKSCVSEEE-TTSS-EEEbbpxaagaxbxx
1kli_L_1181kli   L118129YSLLADGVSCTPEEE-TTSS-EEEbbxxaavaxbbp
1lwd_A_2911lwd   A294305VLVCPDGKTIEAEEE-TTSS-EEEbxbxaavaxbbx
1m15_A_2091m15   A210221IFHNDAKTFLVWEEEETTSSEEEEbxbxaavabbbx
1n16_A_2161n16   A217228IWHNNDKTFLVWEEEETTSSEEEEbbbxaalabbbx
1oan_A_2381oan   A239250TFKNPHAKKQDVEEE-TTSS--EEbbbbaalabbbb
1qh4_A_2161qh4   A217228IWHNDNKTFLVWEEEETTSSEEEEbbbxaavabbbx
1qi9_A_4461qi9   A446457VYPDDDGLKLIDEEE-TTSSSEEEbbxxaavabxbp
1qk1_A_2111qk1   A212223IWHNNEKSFLIWEEEETTS-EEEEbbbxaalabbbb
1rfn_B_1151rfn   B115126YRLAENQKSCEPEEE-TTSSSEEEbbxxaaUaxbbp
2crk_A_2162crk   A217228IWHNDNKSFLVWEEEETTSSEEEEbbbxaavabbbb
3pmg_A_2823pmg   A284295AAFDGDGDRNMIEEE-TTSS-EEEbbbxaavabbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c24_A_2141c24   A     MPJ(1-AMINO-3-METHYLSULFANYL-PROPYL)-PHOSPHINIC ACID W - 221
1cjx_A_1981cjx   A     FE2FE (II) ION P - 214
1cjx_A_1981cjx   A     ACTACETATE ION P - 214
1cjx_A_1981cjx   A     ACTACETATE ION N - 216
1crk_A_2111crk   A     PO4PHOSPHATE ION W - 223
1cru_A_4071cru   A     PQQPYRROLOQUINOLINE QUINONE R - 408
1g6s_A_631g6s   A     FMTFORMIC ACID S - 63
1g6s_A_631g6s   A     FMTFORMIC ACID Y - 64
1g6s_A_631g6s   A     FMTFORMIC ACID T - 65
1g6s_A_631g6s   A     FMTFORMIC ACID L - 66
1g6s_A_631g6s   A     FMTFORMIC ACID S - 67
1g6s_A_631g6s   A     FMTFORMIC ACID R - 72
1g6s_A_631g6s   A     FMTFORMIC ACID C - 73
1g6s_A_631g6s   A     FMTFORMIC ACID E - 74
1h8g_A_2821h8g   A     CHTCHOLINE ION Y - 293
1ivy_A_731ivy   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 76
1ivy_A_731ivy   A     NAGN-ACETYL-D-GLUCOSAMINE P - 77
1ivy_A_731ivy   A     NAGN-ACETYL-D-GLUCOSAMINE D - 78
1ivy_A_731ivy   A     NAGN-ACETYL-D-GLUCOSAMINE G - 79
1k2y_X_2371k2y   X     ZNZINC ION D - 242
1k2y_X_2371k2y   X     TLAL(+)-TARTARIC ACID D - 242
1k2y_X_2371k2y   X     ZNZINC ION G - 243
1k2y_X_2371k2y   X     ZNZINC ION D - 244
1k2y_X_2371k2y   X     TLAL(+)-TARTARIC ACID D - 244
1k2y_X_2371k2y   X     ZNZINC ION G - 245
1k2y_X_2371k2y   X     ZNZINC ION D - 246
1k2y_X_2371k2y   X     TLAL(+)-TARTARIC ACID D - 246
1k2y_X_2371k2y   X     ZNZINC ION R - 247
1k2y_X_2371k2y   X     TLAL(+)-TARTARIC ACID R - 247
1lwd_A_2911lwd   A     ICTISOCITRIC ACID S - 293
1lwd_A_2911lwd   A     ICTISOCITRIC ACID E - 306
1m15_A_2091m15   A     MGMAGNESIUM ION W - 221
1m15_A_2091m15   A     ADPADENOSINE-5'-DIPHOSPHATE W - 221
1qi9_A_4461qi9   A     IODIODIDE ION Y - 447
1qi9_A_4461qi9   A     IODIODIDE ION P - 448
1qi9_A_4461qi9   A     IODIODIDE ION D - 449
1qi9_A_4461qi9   A     IODIODIDE ION D - 450
1qi9_A_4461qi9   A     IODIODIDE ION I - 456
1qi9_A_4461qi9   A     IODIODIDE ION D - 457
3pmg_A_2823pmg   A     PHSPHOSPHONO GROUP D - 287
3pmg_A_2823pmg   A     MGMAGNESIUM ION D - 287
3pmg_A_2823pmg   A     PHSPHOSPHONO GROUP G - 288
3pmg_A_2823pmg   A     MGMAGNESIUM ION G - 288
3pmg_A_2823pmg   A     PHSPHOSPHONO GROUP D - 289
3pmg_A_2823pmg   A     MGMAGNESIUM ION D - 289
3pmg_A_2823pmg   A     MGMAGNESIUM ION G - 290
3pmg_A_2823pmg   A     PHSPHOSPHONO GROUP D - 291
3pmg_A_2823pmg   A     MGMAGNESIUM ION D - 291
3pmg_A_2823pmg   A     PHSPHOSPHONO GROUP R - 292
3pmg_A_2823pmg   A     MGMAGNESIUM ION R - 292

Clusters included in this Subclass
CLUSTER: HA.4.47
CLUSTER: HA.5.14
CLUSTER: HA.6.10
CLUSTER: HA.7.1