Information on SUBCLASS 8.2.1 |
Subclass Accession number: 8009
Subclass: 8.2.1 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 78.6 +/- -1.8 Average RMSD (Å) : 0.200 +/- 0.082 Consensus geometry
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Consensus Sequence: | hDPhTRhEGHLp |
(φψ)-conformation: | bbwpplbpepbb |
Pattern: | [KP] | [I] | [SV] | [IV] | [D] | [P] | [ILV] | [T] | [R] | [IV] | [E] | [G] | [H] | [L] | [KR] | [I] | [EM] | [V] | [E] | [V] | [EK] |
Conservation: | -1.046 | -0.120 | -1.894 | -0.416 | 1.067 | 1.661 | -0.899 | 0.473 | 0.473 | -0.416 | 0.473 | 1.067 | 2.255 | -0.120 | -0.413 | -0.120 | -1.549 | -0.120 | 0.473 | -0.120 | -0.709 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1cc1_L_13 | 1cc1 | L | 13 | 33 | KISIDPLTRVEGHLKIEVEVK | EEEESS--SSSS-EEEEEEEE | bbbbbwxxlbxexbbbbbbbb |
1frf_L_14 | 1frf | L | 15 | 35 | PIVVDPITRIEGHLRIMVEVE | EEEESS--SSBS-EEEEEEEE | xbbbbwxxlbbebbbbbbbbb |
1ubk_L_23 | 1ubk | L | 24 | 44 | PIVVDPVTRIEGHLRIEVEVE | EEEESS--SSBS-EEEEEEEE | xbbbbwxxlbxebbbbbbbbb |
2frv_B_8 | 2frv | B | 8 | 28 | KIVVDPITRIEGHLRIEVEVE | EEEE-S--SSBS-EEEEEEEE | bbbbbwxxlbbexbbbbbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1cc1_L_13 | 1cc1 | L | CSESELENOCYSTEINE | V - 22 |
1cc1_L_13 | 1cc1 | L | CSESELENOCYSTEINE | E - 23 |
1cc1_L_13 | 1cc1 | L | NINICKEL (II) ION | E - 23 |
1cc1_L_13 | 1cc1 | L | CSESELENOCYSTEINE | G - 24 |
1frf_L_14 | 1frf | L | NINICKEL (II) ION | E - 25 |
1ubk_L_23 | 1ubk | L | MPD2-METHYL-2,4-PENTANEDIOL | P - 24 |
1ubk_L_23 | 1ubk | L | MPD2-METHYL-2,4-PENTANEDIOL | I - 25 |
1ubk_L_23 | 1ubk | L | MPD2-METHYL-2,4-PENTANEDIOL | V - 26 |
1ubk_L_23 | 1ubk | L | FNE(MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS, S)NICKEL(II)](FE-NI) | E - 34 |
1ubk_L_23 | 1ubk | L | CMOCARBON MONOXIDE | E - 34 |
1ubk_L_23 | 1ubk | L | MPD2-METHYL-2,4-PENTANEDIOL | R - 38 |
1ubk_L_23 | 1ubk | L | MPD2-METHYL-2,4-PENTANEDIOL | E - 40 |
1ubk_L_23 | 1ubk | L | MPD2-METHYL-2,4-PENTANEDIOL | V - 41 |
1ubk_L_23 | 1ubk | L | MPD2-METHYL-2,4-PENTANEDIOL | E - 42 |
2frv_B_8 | 2frv | B | NINICKEL (II) ION | E - 18 |
2frv_B_8 | 2frv | B | OOXYGEN ATOM | E - 18 |
Clusters included in this Subclass |
CLUSTER: HA.10.16 |