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PDB code:

Information on SUBCLASS 1.2.5

Subclass Accession number: 8141 Subclass: 1.2.5 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates:

Number of loops: 37 Average sequence ID (%) : 18.0 +/- 19.1 Average RMSD (Å) : 0.408 +/- 0.169 Consensus geometry d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 90-135

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a5c_A_167	1a5c	A	184	191	CQQNRLVP	HHHTT-EE	aaaalbxx
1ado_A_160	1ado	A	177	184	CQQNGIVP	HHHTT-EE	aaaavbxx
1ako_*_44	1ako	-	47	54	VAKLGYNV	HHHTT-EE	aaaavbxb
1cbg_*_111	1cbg	-	124	131	VLANGMQP	HHHTT-EE	aaaalbbw
1ccw_A_18	1ccw	A	27	34	FTNAGFNV	HHHTT-EE	aaaagxxx
1d3v_A_70	1d3v	A	87	94	TQKNGTIS	HHHTT-EE	aaaavbxx
1ehw_A_21	1ehw	A	28	35	FERRGFTL	HHHTT-EE	aaaavxbx
1eon_A_37	1eon	A	56	63	AEKHGYIV	HHHTT-EE	aaaavxxb
1esw_A_179	1esw	A	203	210	AEALGIRI	HHHTT-EE	aaaavbbb
1f2j_A_170	1f2j	A	187	194	SQLCGLVP	HHHTT-EE	aaaavbxx
1fa2_A_71	1fa2	A	80	87	VKKCGLKI	HHHTT-EE	aaaavbxb
1fba_A_160	1fba	A	177	184	CQSQRIVP	HHHTT-EE	aaaavbxx
1fdj_A_1160	1fdj	A	1177	1184	CQQNGLVP	HHHTT-EE	aaaavbxx
1fs0_G_91	1fs0	G	106	113	WTDKGVQC	HHHTT-EE	aaaavxxb
1g2o_A_210	1g2o	A	216	223	ARAAGAEV	HHHTT-EE	aaaavbxb
1h05_A_29	1h05	A	40	47	AAELGLKA	HHHTT-EE	aaaavbbx
1hwx_A_254	1hwx	A	263	270	LHRFGAKC	HHHTT-EE	aaaavxbx
1iw7_C_883	1iw7	C	894	901	GYFLGQRY	HHHHTEEE	aaaalbbb
1k44_A_19	1k44	A	26	33	IERKGLTI	HHHTT-EE	aaaagxbx
1k8t_A_309	1k8t	A	319	326	ARELNTYI	HHHHTEEE	aaaalbxb
1l9x_A_34	1l9x	A	40	47	LESAGARV	HHHTT-EE	aaaavbbb
1m0s_A_141	1m0s	A	148	155	LAALGGSP	HHHTT-EE	aaaagxbw
1nns_A_286	1nns	A	286	293	DAKYGFVA	HHHHTEEE	aaaavxbx
1now_A_380	1now	A	395	402	IATINKGS	HHHTT-EE	aaaalbxb
1o8b_A_140	1o8b	A	147	154	LVKLGGRP	HHHTT-EE	aaaagbbw
1o98_A_411	1o98	A	432	439	ILAKGGIA	HHHTT-EE	aaaavxbb
1pq3_A_89	1pq3	A	106	113	AVSDGYSC	HHHTT-EE	aaaavxxx
1qe5_A_225	1qe5	A	231	238	ARHCGLEV	HHHTT-EE	aaaavxxb
1qh4_A_308	1qh4	A	312	319	LKRLRLQK	HHHHTEEE	aaaalbbb
1spb_P_23	1spb	P	30	37	ISEKGGKV	HHHTT-EE	aaaavxbp
1ufk_A_224	1ufk	A	231	238	MAGAGFRP	HHHTT-EE	aaaavxbw
1xgs_A_30	1xgs	A	41	48	IMELGGKP	HHHTT-EE	aaaagbbx
1xyz_A_730	1xyz	A	743	750	YAEIGVIV	HHHTT-EE	aaaavbxb
2cev_A_68	2cev	A	85	92	VVQRGRFP	HHHTT-EE	aaaavbxw
2sfa_*_179	2sfa	-	183	190	LSAYGVSI	HHHHTEEE	aaaavbbx
2sga_*_231	2sga	-	235	242	LSAYGATV	HHHHTEEE	aaaavbbx
3pfk_*_139	3pfk	-	157	164	ATSHERTY	HHHTT-EE	aaaalbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ado_A_160	1ado	A	13P1,3-DIHYDROXYACETONEPHOSPHATE	E - 187
1ado_A_160	1ado	A	13P1,3-DIHYDROXYACETONEPHOSPHATE	E - 189
1ccw_A_18	1ccw	A	CNCCO-CYANOCOBALAMIN	V - 18
1ccw_A_18	1ccw	A	CNCCO-CYANOCOBALAMIN	G - 19
1ccw_A_18	1ccw	A	CNCCO-CYANOCOBALAMIN	N - 20
1ccw_A_18	1ccw	A	CNCCO-CYANOCOBALAMIN	I - 22
1ccw_A_18	1ccw	A	CNCCO-CYANOCOBALAMIN	L - 23
1ccw_A_18	1ccw	A	CNCCO-CYANOCOBALAMIN	F - 27
1ccw_A_18	1ccw	A	CNCCO-CYANOCOBALAMIN	L - 40
1esw_A_179	1esw	A	EDO1,2-ETHANEDIOL	F - 184
1esw_A_179	1esw	A	EDO1,2-ETHANEDIOL	H - 185
1esw_A_179	1esw	A	ACRACARBOSE	P - 215
1esw_A_179	1esw	A	EDO1,2-ETHANEDIOL	P - 215
1fa2_A_71	1fa2	A	DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE	I - 90
1fa2_A_71	1fa2	A	DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE	S - 92
1fdj_A_1160	1fdj	A	2FP1,6-FRUCTOSE DIPHOSPHATE (LINEAR FORM)	E - 1187
1fdj_A_1160	1fdj	A	2FP1,6-FRUCTOSE DIPHOSPHATE (LINEAR FORM)	E - 1189
1g2o_A_210	1g2o	A	IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL	T - 230
1g2o_A_210	1g2o	A	IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL	N - 231
1g2o_A_210	1g2o	A	IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL	L - 232
1hwx_A_254	1hwx	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	N - 254
1hwx_A_254	1hwx	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	V - 255
1hwx_A_254	1hwx	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	G - 256
1hwx_A_254	1hwx	A	GTPGUANOSINE-5'-TRIPHOSPHATE	L - 257
1hwx_A_254	1hwx	A	GTPGUANOSINE-5'-TRIPHOSPHATE	H - 258
1hwx_A_254	1hwx	A	GTPGUANOSINE-5'-TRIPHOSPHATE	R - 261
1hwx_A_254	1hwx	A	GTPGUANOSINE-5'-TRIPHOSPHATE	Y - 262
1hwx_A_254	1hwx	A	GTPGUANOSINE-5'-TRIPHOSPHATE	R - 265
1hwx_A_254	1hwx	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	G - 274
1hwx_A_254	1hwx	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	E - 275
1iw7_C_883	1iw7	C	MGMAGNESIUM ION	L - 886
1iw7_C_883	1iw7	C	MGMAGNESIUM ION	H - 889
1iw7_C_883	1iw7	C	MGMAGNESIUM ION	L - 890
1iw7_C_883	1iw7	C	MGMAGNESIUM ION	Y - 895
1iw7_C_883	1iw7	C	MGMAGNESIUM ION	F - 896
1iw7_C_883	1iw7	C	MGMAGNESIUM ION	L - 897
1iw7_C_883	1iw7	C	MGMAGNESIUM ION	G - 898
1iw7_C_883	1iw7	C	MGMAGNESIUM ION	Q - 899
1iw7_C_883	1iw7	C	MGMAGNESIUM ION	R - 900
1iw7_C_883	1iw7	C	MGMAGNESIUM ION	Y - 901
1now_A_380	1now	A	IFG(2R,3R,4S,5R)-2-ACETAMIDO-3,4-DIHYDROXY-5-HYDROXYMETHYL-PIPERIDINIUM	W - 405
1o8b_A_140	1o8b	A	MSESELENOMETHIONINE	R - 140
1o8b_A_140	1o8b	A	MSESELENOMETHIONINE	S - 141
1o8b_A_140	1o8b	A	MSESELENOMETHIONINE	A - 142
1o8b_A_140	1o8b	A	MSESELENOMETHIONINE	L - 147
1o8b_A_140	1o8b	A	MSESELENOMETHIONINE	L - 150
1o8b_A_140	1o8b	A	MSESELENOMETHIONINE	G - 151
1o8b_A_140	1o8b	A	MSESELENOMETHIONINE	G - 152
1o8b_A_140	1o8b	A	MSESELENOMETHIONINE	R - 153
1pq3_A_89	1pq3	A	SULSULFATE ANION	R - 90
3pfk_*_139	3pfk	*	PO4PHOSPHATE ION	R - 154

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1h05_A_29	1h05	A	SO3SO4 BINDING SITE FOR CHAIN A	R - 50

Clusters included in this Subclass

CLUSTER: HE.2.8

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