PDB: 2iad Compound: mhc class ii i-ad Classification: MHC II Entry date in PDB: 1998-11-18 Resolution [Å]: 2.40 R-Factor: 0.253

CHAIN: A SWISS-PROT/TREMBL: P04228    KEYWORD: 3D-structure    Glycoprotein    MHC II    Signal    Transmembrane    SCOP: b.1.1.2 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    C1 set domains (antibody constant domain-like)    Class II MHC alpha chain, C-terminal domain    Mouse (Mus musculus), I-A group SCOP: d.19.1.1 Alpha and beta proteins (a+b)    MHC antigen-recognition domain    MHC antigen-recognition domain    MHC antigen-recognition domain    Class II MHC alpha chain, N-terminal domain    Mouse (Mus musculus), I-AD GO:   CHAIN: B SWISS-PROT/TREMBL: P01921    KEYWORD: Glycoprotein    MHC II    Signal    Transmembrane    SCOP: b.1.1.2 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    C1 set domains (antibody constant domain-like)    Class II MHC beta chain, C-terminal domain    Mouse (Mus musculus), I-A group SCOP: d.19.1.1 Alpha and beta proteins (a+b)    MHC antigen-recognition domain    MHC antigen-recognition domain    MHC antigen-recognition domain    Class II MHC beta chain, N-terminal domain    Mouse (Mus musculus), I-AD GO:

Image Source: PDB

Loops in ArchDB95 clusters

2iad_A_40 - EH => SUBCLASS : 12.3.1
2iad_B_86 - HE => SUBCLASS : 5.11.3
2iad_A_57 - HE => SUBCLASS : 10.2.1
2iad_A_138 - HA => SUBCLASS : 3.1.1
2iad_A_29 - HA => SUBCLASS : 4.1.1

Loops not clustered in ArchDB

2iad_B_115 - AR
2iad_B_136 - AR
2iad_B_142 - AR
2iad_A_145 - AR
2iad_A_132 - AR
2iad_A_126 - AR
2iad_B_155 - AR
2iad_A_103 - AR
2iad_B_47 - EH
2iad_B_148 - HA
2iad_B_171 - HA
2iad_B_128 - HA
2iad_A_6 - HA
2iad_B_98 - HA
2iad_A_19 - HA
2iad_A_88 - HA
2iad_A_118 - HA
2iad_A_160 - HA
2iad_B_9 - HA
2iad_B_23 - HA
2iad_B_35 - HA
2iad_B_55 - HH
2iad_B_65 - HH
2iad_B_79 - HH

1d5m B - percentage of sequence identity: 63
1d9k C - percentage of sequence identity: 92
1d9k G - percentage of sequence identity: 92
1es0 A - percentage of sequence identity: 97
1f3j A - percentage of sequence identity: 100
1f3j D - percentage of sequence identity: 100
1fv1 B - percentage of sequence identity: 63
1i3r B - percentage of sequence identity: 64
1iao A - percentage of sequence identity: 100
1jl4 A - percentage of sequence identity: 92
1ktd B - percentage of sequence identity: 65
1lnu A - percentage of sequence identity: 91
1lnu B - percentage of sequence identity: 93
1lnu C - percentage of sequence identity: 91
1lnu E - percentage of sequence identity: 91
1lnu G - percentage of sequence identity: 91
1s9v A - percentage of sequence identity: 67
1s9v B - percentage of sequence identity: 74
1s9v D - percentage of sequence identity: 67
1u3h C - percentage of sequence identity: 90
1u3h G - percentage of sequence identity: 90
1uvq A - percentage of sequence identity: 67
1uvq B - percentage of sequence identity: 76