ArchDB - Biological DataBase of Protein Loops

Information on 1ktd

PDB: 1ktd
Compound: h-2 class ii histocompatibility antigen, e-d alpha
Classification: IMMUNE SYSTEM
Entry date in PDB: 2002-05-01
Resolution [Å]: 2.40
R-Factor: 0.220

CHAIN: A

SWISS-PROT/TREMBL: P01904
   KEYWORD: 3D-structure    Glycoprotein    MHC II    Signal    Transmembrane
SCOP: b.1.1.2 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    C1 set domains (antibody constant domain-like)    Class II MHC alpha chain, C-terminal domain    Mouse (Mus musculus), I-E group
SCOP: d.19.1.1 Alpha and beta proteins (a+b)    MHC antigen-recognition domain    MHC antigen-recognition domain    MHC antigen-recognition domain    Class II MHC alpha chain, N-terminal domain    Mouse (Mus musculus), I-EK
GO:  membrane    immune response

CHAIN: B

SWISS-PROT/TREMBL: P00021
   KEYWORD: 3D-structure    Acetylation    Electron transport    Heme    Mitochondrion    Respiratory chain
SCOP: b.1.1.2 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    C1 set domains (antibody constant domain-like)    Class II MHC beta chain, C-terminal domain    Mouse (Mus musculus), I-E group
SCOP: d.19.1.1 Alpha and beta proteins (a+b)    MHC antigen-recognition domain    MHC antigen-recognition domain    MHC antigen-recognition domain    Class II MHC beta chain, N-terminal domain    Mouse (Mus musculus), I-EK
GO:  membrane    electron transporter activity    heme binding    electron transport    immune response

CHAIN: C

CHAIN: D

Image Source: PDB

Stored Loops of 1ktd

Loops in ArchDB95 clusters

1ktd_B_163 - AR => SUBCLASS : 3.14.1
1ktd_B_82 - HH => SUBCLASS : 1.1.1

Loops not clustered in ArchDB

1ktd_B_169 - AR
1ktd_B_182 - AR
1ktd_B_140 - AR
1ktd_B_74 - EH
1ktd_B_198 - HA
1ktd_B_175 - HA
1ktd_B_36 - HA
1ktd_B_155 - HA
1ktd_B_125 - HA
1ktd_B_62 - HA
1ktd_B_51 - HA
1ktd_B_106 - HE
1ktd_B_92 - HH

Homologous structures to 1ktd classified in ArchDB

1a6a B - percentage of sequence identity: 78
1aqd B - percentage of sequence identity: 77
1aqd E - percentage of sequence identity: 77
1aqd H - percentage of sequence identity: 77
1aqd K - percentage of sequence identity: 77
1bx2 B - percentage of sequence identity: 77
1bx2 E - percentage of sequence identity: 77
1d5m B - percentage of sequence identity: 77
1d5x B - percentage of sequence identity: 78
1d5z B - percentage of sequence identity: 78
1d6e B - percentage of sequence identity: 78
1d9k D - percentage of sequence identity: 63
1d9k H - percentage of sequence identity: 63
1dlh B - percentage of sequence identity: 77
1dlh E - percentage of sequence identity: 77
1es0 B - percentage of sequence identity: 63
1f3j B - percentage of sequence identity: 63
1f3j E - percentage of sequence identity: 63
1fne B - percentage of sequence identity: 100
1fne D - percentage of sequence identity: 100
1fng A - percentage of sequence identity: 99
1fng B - percentage of sequence identity: 100
1fng D - percentage of sequence identity: 100
1fv1 B - percentage of sequence identity: 74
1fv1 E - percentage of sequence identity: 75
1fyt B - percentage of sequence identity: 77
1h15 B - percentage of sequence identity: 75
1h15 E - percentage of sequence identity: 75
1hqr B - percentage of sequence identity: 75
1hxy B - percentage of sequence identity: 77
1i3r B - percentage of sequence identity: 100
1i3r D - percentage of sequence identity: 100
1i3r F - percentage of sequence identity: 100
1i3r H - percentage of sequence identity: 100
1iak B - percentage of sequence identity: 64
1iao B - percentage of sequence identity: 65
1iea B - percentage of sequence identity: 100
1iea D - percentage of sequence identity: 100
1ieb B - percentage of sequence identity: 100
1ieb D - percentage of sequence identity: 100
1j8h B - percentage of sequence identity: 77
1jk8 B - percentage of sequence identity: 65
1jl4 B - percentage of sequence identity: 64
1jwm B - percentage of sequence identity: 77
1jws B - percentage of sequence identity: 77
1jwu B - percentage of sequence identity: 77
1k2d B - percentage of sequence identity: 65
1kg0 B - percentage of sequence identity: 77
1klg B - percentage of sequence identity: 77
1klu B - percentage of sequence identity: 77
1kt2 B - percentage of sequence identity: 98
1kt2 D - percentage of sequence identity: 98
1ktd B - percentage of sequence identity: 100
1ktd D - percentage of sequence identity: 100
1lnu B - percentage of sequence identity: 64
1lnu D - percentage of sequence identity: 67
1lnu F - percentage of sequence identity: 67
1lnu H - percentage of sequence identity: 67
1lo5 B - percentage of sequence identity: 77
1muj B - percentage of sequence identity: 67
1pyw B - percentage of sequence identity: 77
1r5i B - percentage of sequence identity: 77
1r5i F - percentage of sequence identity: 77
1r5v B - percentage of sequence identity: 99
1r5v D - percentage of sequence identity: 99
1r5w B - percentage of sequence identity: 99
1r5w D - percentage of sequence identity: 99
1s9v B - percentage of sequence identity: 65
1s9v E - percentage of sequence identity: 65
1seb B - percentage of sequence identity: 77
1seb F - percentage of sequence identity: 77
1sje B - percentage of sequence identity: 77
1sjh B - percentage of sequence identity: 77
1t5w B - percentage of sequence identity: 77
1t5w E - percentage of sequence identity: 77
1t5x B - percentage of sequence identity: 77
1u3h D - percentage of sequence identity: 65
1u3h H - percentage of sequence identity: 65
1uvq B - percentage of sequence identity: 68
1ymm B - percentage of sequence identity: 77
1zgl B - percentage of sequence identity: 75
1zgl E - percentage of sequence identity: 75
1zgl H - percentage of sequence identity: 75
1zgl K - percentage of sequence identity: 75
2iad B - percentage of sequence identity: 65
2seb B - percentage of sequence identity: 78