Information on SUBCLASS 4.1.7 |
Subclass Accession number: 627
Subclass: 4.1.7 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 15 Average sequence ID (%) : 9.1 +/- 12.1 Average RMSD (Å) : 0.387 +/- 0.200 Consensus geometry
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Consensus Sequence: | XpXXXcXX |
(φψ)-conformation: | bbaaalbb |
Pattern: | x | x | [denqs] | x | x | x | [dgkn] | x | x | [adegnqs] |
Conservation: | -0.669 | -0.377 | 1.902 | -0.280 | -0.472 | -0.500 | 1.780 | -0.668 | -0.788 | 0.070 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bjn_A_151 | 1bjn | A | 151 | 158 | .NETIDGIA. | .EETTTTEE. | .bxaaavbb. |
1bk1_*_16 | 1bk1 | - | 18 | 27 | TYDESAGTFS | EEEGGGTEEE | bbbaaavbbb |
1cyx_*_172 | 1cyx | - | 174 | 183 | FFIPRLGSQI | EEEGGGTEEE | xbbaaalbbb |
1ei1_A_202 | 1ei1 | A | 205 | 214 | LRDKRDGKED | EEETTT--EE | bbxaaavxbb |
1fm4_A_66 | 1fm4 | A | 73 | 82 | EVDHTNFKYN | EEETTTTEEE | bbbaaalbbb |
1izn_A_151 | 1izn | A | 162 | 171 | QFQPKNFWNG | EEEGGGTEEE | bbbaaalbbb |
1ji1_A_555 | 1ji1 | A | 560 | 569 | ITDDTNKIYS | EEETTTTEEE | bbbaaalbbb |
1ji2_A_504 | 1ji2 | A | 509 | 518 | HADKQANLYA | EEETTTTEEE | bbbaaalbbb |
1l3a_A_200 | 1l3a | A | 207 | 216 | VQNKLINLDE | EEEGGGTEEE | bbbaaalxbb |
1m56_B_217 | 1m56 | B | 219 | 228 | WTVPAFGVKQ | EEEGGGTEEE | bbbaaavbbb |
1n0u_A_209 | 1n0u | A | 211 | 220 | FGSGLHGWAF | EEETTTTEEE | bbbaaagbbb |
1qd6_C_206 | 1qd6 | C | 213 | 222 | QYNWNTGYGG | EE-TTT--EE | bbxaaavxbb |
1su4_A_478 | 1su4 | A | 486 | 495 | EFSRDRKSMS | EEETTTTEEE | pxbaaalbbb |
1uwc_A_35 | 1uwc | A | 41 | 50 | IYNAQTDING | EEETTTTEEE | bbbaaalxbb |
1ux2_A_27 | 1ux2 | A | 40 | 49 | EVNEITNEVD | EEETTTTEEE | bbbaaalbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1bjn_A_151 | 1bjn | A | LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) | N - 151 |
1bjn_A_151 | 1bjn | A | LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) | E - 152 |
1bjn_A_151 | 1bjn | A | LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) | T - 153 |
1cyx_*_172 | 1cyx | * | CUADINUCLEAR COPPER ION | H - 172 |
1cyx_*_172 | 1cyx | * | CUADINUCLEAR COPPER ION | S - 173 |
1fm4_A_66 | 1fm4 | A | DHODEOXYCHOLIC ACID | V - 67 |
1fm4_A_66 | 1fm4 | A | DHODEOXYCHOLIC ACID | D - 69 |
1fm4_A_66 | 1fm4 | A | DHODEOXYCHOLIC ACID | Y - 81 |
1fm4_A_66 | 1fm4 | A | DHODEOXYCHOLIC ACID | Y - 83 |
1fm4_A_66 | 1fm4 | A | DHODEOXYCHOLIC ACID | V - 85 |
1m56_B_217 | 1m56 | B | CUCOPPER (II) ION | H - 217 |
1m56_B_217 | 1m56 | B | CUCOPPER (II) ION | S - 218 |
1m56_B_217 | 1m56 | B | MGMAGNESIUM ION | S - 218 |
1m56_B_217 | 1m56 | B | MGMAGNESIUM ION | D - 229 |
1ux2_A_27 | 1ux2 | A | EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | I - 36 |
1ux2_A_27 | 1ux2 | A | EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | W - 53 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1uwc_A_35 | 1uwc | A | AC3NAG BINDING SITE FOR CHAIN B | N - 43 |
1ux2_A_27 | 1ux2 | A | BC2EPE BINDING SITE FOR CHAIN E | W - 53 |
Clusters included in this Subclass |
CLUSTER: HA.3.40 |
CLUSTER: HA.4.33 |
CLUSTER: HA.5.60 |