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Information on SUBCLASS 1.4.1
Subclass Accession number: 4484
Subclass: 1.4.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 70

Average sequence ID (%) : 18.7 +/- 17.6
Average RMSD (Å) : 0.476 +/- 0.176

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: XXGXp
(φψ)-conformation: aaeaa
Pattern: xxx[acfgiklmtv][GR]x[adegknqrst]x[afgilmpvwy]
Conservation:-0.441-0.370-0.417-0.3612.633-0.407-0.040-0.503-0.094
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
176l_A_93176l   A103111VFQMGETGVHHHH-HHHHaaaaeaaaa
1a8h_*_3081a8h   -312320LEKYGRDALHHHH-HHHHaaaaeaaaa
1aop_*_3071aop   -311319LERVGVETFHHHH-HHHHaaaaMaaaa
1b63_A_2091b63   A213221GAICGTAFLHHHH-HHHHaaaaeaaaa
1bg4_*_1441bg4   -146154YNVIGEDYVHHHT-THHHaaaaeaaaa
1bqb_A_2321bqb   A242250IQAIGKSKSHHHH-HHHHaaaaeaaaa
1cb6_A_16591cb6   A16601668EKYLGPQYVHHHH-HHHHeNaaeaaaa
1d3g_A_3571d3g   A359367LTFWGPPVVHHHH-THHHaaaaeaaaa
1d3v_A_2001d3v   A203211VDKLGIGKVHHHH-HHHHaaaaeaaaa
1dvj_A_451dvj   A4856VLSEGMDIIHHHH-THHHaaaaeaaaa
1e58_A_991e58   A103111AEKYGDEQVHHHH-HHHHaaaaeaaaa
1f14_A_2461f14   A250258LDYVGLDTTHHHH-HHHHaaaaMaaaa
1f76_A_3191f76   A321329FIFKGPPLIHHHH-HHHHaaaaeaaaa
1fh9_A_1401fh9   A142150QQKLGNGYIHHHH-TTHHaaaaeaaaa
1fs7_A_1371fs7   A142150IEQDGELEYHHHH-HHHHaaaaeaaaa
1geq_A_891geq   A92100IYRAGVRNFHHHH-HHHHaaaaMaaaa
1gk8_A_2691gk8   A269277YLTGGFTANHHHH-HHHHaaaaeaaaa
1h0c_A_2661h0c   A279287IAEQGLENSHHHH-HHHHaaaaeaaaa
1h16_A_1821h16   A184192VALYGIDYLHHHH-HHHHaaaaeaaaa
1h76_A_6551h76   A656664ESYLGADYIHHHH-HHHHaaaaeaaaa
1h7s_A_2231h7s   A228236GSVFGQKQLHHHH-HHHHaaaaeaaaa
1hnu_A_1611hnu   A166174PLKFGTNTTHHHH-HHHHaaaaeaaaa
1hzd_A_2201hzd   A225233PRAIGMSLAHHHH-HHHHaaaaeaaaa
1i1w_A_1431i1w   A145153LNVIGEDYIHHHT-TTHHaaaaeaaaa
1iat_A_2811iat   A284292ALHVGFDNFHHHH-HHHHaaaaeaaaa
1ih7_A_7391ih7   A752760MLQEGEESLHHHT-HHHHaaaaeaaaa
1j09_A_4471j09   A451459LALLGKERAHHHT-HHHHaaaaeaaaa
1jd5_A_2911jd5   A294302KLMKGQLYIHHHH-HHHHaaaaeaaaa
1jil_A_2941jil   A305313KFIHGEDALHHHH-HHHHaaaaeaaaa
1kv5_A_1801kv5   A195203SSKIGADVAHHHT-HHHHaaaaeaaaa
1l4u_A_451l4u   A4957FATDGEQEFHHHT-HHHHaaaaeaaaa
1m2r_A_2381m2r   A246254AKVLGTDGLHHHH-HHHHaaaaeaaaa
1m5w_A_2161m5w   A222230AVMTGLKDAHHHH-HHHHaaaaeaaaa
1n55_A_1801n55   A195203SENIGTDVAHHHT-HHHHaaaaeaaaa
1n5u_A_61n5u   A1119FKDLGEENFHHHH-HHHHaaaaeaaaa
1n82_A_1481n82   A150158RQIIGDDFMHHHH-TTHHaaaaeaaaa
1na7_A_2381na7   A246254AKVLGTEDLHHHH-SHHHaaaaeaaaa
1nd4_A_2181nd4   A229237AEELGGEWAHHHH-HHHHaaaaeaaaa
1ney_A_1781ney   A193201ASKLGDKAAHHHH-HHHHaaaaeaaaa
1nnf_A_1401nnf   A150158SKMKGDKVAHHHH-HHHHaaaaeaaaa
1nq6_A_1411nq6   A143151QDKLGNGFIHHHH-TTHHaaaaeaaaa
1o5x_A_1781o5x   A193201KDTCGEKQAHHHT-HHHHaaaaeaaaa
1o82_A_511o82   A5967IKKKGKRAVHHHH-HHHHaaaaeaaaa
1o8u_A_1561o8u   A161169PHVLGSNRGHHHH-HHHHaaaaeaaaa
1ovn_A_1851ovn   A201209IHEVGYDFLHHHH-THHHaaaaeaaaa
1pmi_*_1661pmi   -169177NEIIGQELVHHHH-HHHHaaaaeaaaa
1pmi_*_771pmi   -7886QEYLGESIIHHHT-HHHHaaaaeaaaa
1q4g_A_4131q4g   A414422LVDYGVEALHHHH-HHHHaaaaeaaaa
1q6o_A_361q6o   A3947CVGEGVRAVHHHH-THHHaaaaeaaaa
1q8h_A_271q8h   A3341ADHIGFQEAHHHH-HHHHaaaaeaaaa
1qe3_A_3241qe3   A332340EYLLGKPLAHHHH-HHHHaaaaeaaaa
1qfx_A_2871qfx   A301309LLNQGPKEAHHHH-HHHHaaaaeaaaa
1qks_A_831qks   A8694TRDLGFDYLHHHH-HHHHaaaaeaaaa
1qme_A_3971qme   A404412EQKMGDATWHHHH-HHHHaaaaeaaaa
1qmg_A_3591qmg   A364372ISTKGMLALHHHT-HHHHaaaaeaaaa
1qsa_A_5451qsa   A551559AYNAGPGRVHHHH-HHHHaaaaeaaaa
1rbl_A_2691rbl   A269277FLTAGFTANHHHH-HHHHaaaaeaaaa
1ro2_A_1151ro2   A119127KAWIGESALHHHH-HHHHaaaaeaaaa
1ryo_A_3111ryo   A312320KMYLGYEYVHHHH-HHHHaaaaeaaaa
1s68_A_1721s68   A179187VDHAGLVDAHHHH-HHHHaaaaeaaaa
1ujp_A_1001ujp   A103111VLAWGPERFHHHH-HHHHaaaaeaaaa
1umv_X_21umv   X1018NYVMGESGVHHHH-TTHHaaaaeaaaa
1uum_A_3571uum   A359367LIFLGPPVVHHHH-THHHaaaaeaaaa
1vhn_A_2401vhn   A255263IKTKGERKAHHHH-HHHHaaaaeaaaa
1via_A_471via   A5159FEQKRENFFHHHH-HHHHaaaaeaaaa
1vj5_A_4431vj5   A453461FKKSGFRGPHHHHTTHHHaaaaeaaaa
1vj7_A_871vj7   A9199EFDFGKDVRHHHH-HHHHaaaaeaaaa
1xyz_A_6581xyz   A660668RNVIGQDYLHHHH-TTHHaaaaeaaaa
2cev_A_1952cev   A198206VDRLGMTRVHHHH-HHHHaaaaeaaaa
3thi_A_1943thi   A204212INMAGEKPSHHHH-HHHHaaaaeaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aop_*_3071aop   *     SRMSIROHEME K - 308
1d3g_A_3571d3g   A     FMNFLAVIN MONONUCLEOTIDE T - 357
1d3g_A_3571d3g   A     FMNFLAVIN MONONUCLEOTIDE A - 358
1d3g_A_3571d3g   A     BRE2-BIPHENYL-4-YL-6-FLUORO-3-METHYL-QUINOLINE-4-CARBOXYLIC ACID L - 359
1d3g_A_3571d3g   A     BRE2-BIPHENYL-4-YL-6-FLUORO-3-METHYL-QUINOLINE-4-CARBOXYLIC ACID T - 360
1d3g_A_3571d3g   A     BRE2-BIPHENYL-4-YL-6-FLUORO-3-METHYL-QUINOLINE-4-CARBOXYLIC ACID F - 361
1d3g_A_3571d3g   A     BRE2-BIPHENYL-4-YL-6-FLUORO-3-METHYL-QUINOLINE-4-CARBOXYLIC ACID G - 363
1d3g_A_3571d3g   A     BRE2-BIPHENYL-4-YL-6-FLUORO-3-METHYL-QUINOLINE-4-CARBOXYLIC ACID P - 364
1f76_A_3191f76   A     FMNFLAVIN MONONUCLEOTIDE S - 319
1f76_A_3191f76   A     FMNFLAVIN MONONUCLEOTIDE G - 320
1f76_A_3191f76   A     MSESELENOMETHIONINE F - 321
1f76_A_3191f76   A     MSESELENOMETHIONINE P - 326
1f76_A_3191f76   A     OROOROTIC ACID P - 326
1f76_A_3191f76   A     OROOROTIC ACID P - 327
1f76_A_3191f76   A     MSESELENOMETHIONINE I - 329
1f76_A_3191f76   A     MSESELENOMETHIONINE K - 330
1gk8_A_2691gk8   A     EGLETHYLENE GLYCOL Y - 269
1gk8_A_2691gk8   A     EGLETHYLENE GLYCOL L - 270
1gk8_A_2691gk8   A     EGLETHYLENE GLYCOL T - 271
1gk8_A_2691gk8   A     EGLETHYLENE GLYCOL G - 272
1gk8_A_2691gk8   A     EGLETHYLENE GLYCOL G - 273
1gk8_A_2691gk8   A     EGLETHYLENE GLYCOL F - 274
1gk8_A_2691gk8   A     HYP4-HYDROXYPROLINE A - 281
1gk8_A_2691gk8   A     SMCS-METHYLCYSTEINE Y - 283
1gk8_A_2691gk8   A     HYP4-HYDROXYPROLINE R - 285
1h0c_A_2661h0c   A     GOLGLYCEROL L - 278
1h0c_A_2661h0c   A     GOLGLYCEROL Q - 282
1h0c_A_2661h0c   A     GOLGLYCEROL R - 289
1h0c_A_2661h0c   A     GOLGLYCEROL Q - 290
1h0c_A_2661h0c   A     GOLGLYCEROL H - 291
1h0c_A_2661h0c   A     GOLGLYCEROL E - 293
1h0c_A_2661h0c   A     GOLGLYCEROL A - 294
1h16_A_1821h16   A     PG4TETRAETHYLENE GLYCOL D - 195
1h16_A_1821h16   A     PG4TETRAETHYLENE GLYCOL A - 198
1h16_A_1821h16   A     PG4TETRAETHYLENE GLYCOL Q - 199
1h16_A_1821h16   A     PG4TETRAETHYLENE GLYCOL F - 200
1hnu_A_1611hnu   A     EDO1,2-ETHANEDIOL S - 164
1hnu_A_1611hnu   A     REOPERRHENATE L - 167
1hnu_A_1611hnu   A     EDO1,2-ETHANEDIOL L - 167
1hnu_A_1611hnu   A     REOPERRHENATE K - 168
1hnu_A_1611hnu   A     EDO1,2-ETHANEDIOL K - 168
1i1w_A_1431i1w   A     UNXUNKNOWN ATOM OR ION L - 145
1i1w_A_1431i1w   A     EOHETHANOL L - 145
1i1w_A_1431i1w   A     UNXUNKNOWN ATOM OR ION I - 148
1i1w_A_1431i1w   A     UNXUNKNOWN ATOM OR ION G - 149
1i1w_A_1431i1w   A     UNXUNKNOWN ATOM OR ION E - 150
1i1w_A_1431i1w   A     EOHETHANOL E - 150
1i1w_A_1431i1w   A     UNXUNKNOWN ATOM OR ION D - 151
1i1w_A_1431i1w   A     UNXUNKNOWN ATOM OR ION Q - 158
1i1w_A_1431i1w   A     EOHETHANOL Q - 158
1i1w_A_1431i1w   A     UNXUNKNOWN ATOM OR ION T - 159
1i1w_A_1431i1w   A     UNXUNKNOWN ATOM OR ION A - 160
1i1w_A_1431i1w   A     EOHETHANOL R - 161
1i1w_A_1431i1w   A     UNXUNKNOWN ATOM OR ION A - 162
1i1w_A_1431i1w   A     UNXUNKNOWN ATOM OR ION A - 163
1jd5_A_2911jd5   A     ZNZINC ION R - 291
1jd5_A_2911jd5   A     ZNZINC ION F - 292
1jd5_A_2911jd5   A     ZNZINC ION V - 293
1kv5_A_1801kv5   A     GOLGLYCEROL Q - 181
1kv5_A_1801kv5   A     GOLGLYCEROL Q - 182
1kv5_A_1801kv5   A     GOLGLYCEROL E - 185
1kv5_A_1801kv5   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE W - 193
1kv5_A_1801kv5   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE K - 197
1m5w_A_2161m5w   A     PO4PHOSPHATE ION H - 216
1m5w_A_2161m5w   A     PO4PHOSPHATE ION A - 217
1n5u_A_61n5u   A     MYRMYRISTIC ACID V - 7
1n5u_A_61n5u   A     MYRMYRISTIC ACID R - 10
1n5u_A_61n5u   A     MYRMYRISTIC ACID L - 14
1n5u_A_61n5u   A     MYRMYRISTIC ACID F - 19
1n5u_A_61n5u   A     MYRMYRISTIC ACID L - 22
1n5u_A_61n5u   A     MYRMYRISTIC ACID V - 23
1n5u_A_61n5u   A     MYRMYRISTIC ACID A - 26
1n5u_A_61n5u   A     MYRMYRISTIC ACID F - 27
1n82_A_1481n82   A     GOLGLYCEROL D - 155
1n82_A_1481n82   A     GOLGLYCEROL D - 156
1n82_A_1481n82   A     GOLGLYCEROL F - 157
1n82_A_1481n82   A     GOLGLYCEROL M - 158
1n82_A_1481n82   A     GOLGLYCEROL E - 159
1n82_A_1481n82   A     GOLGLYCEROL Y - 166
1nd4_A_2181nd4   A     KANKANAMYCIN A L - 223
1nd4_A_2181nd4   A     KANKANAMYCIN A R - 226
1nd4_A_2181nd4   A     KANKANAMYCIN A D - 227
1nd4_A_2181nd4   A     KANKANAMYCIN A E - 230
1nd4_A_2181nd4   A     KANKANAMYCIN A E - 231
1ney_A_1781ney   A     FTRFLUOROTRYPTOPHANE D - 180
1ney_A_1781ney   A     FTRFLUOROTRYPTOPHANE I - 184
1nnf_A_1401nnf   A     EDT{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID G - 140
1nnf_A_1401nnf   A     EDT{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID A - 141
1nnf_A_1401nnf   A     EDT{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID F - 142
1q4g_A_4131q4g   A     NAGN-ACETYL-D-GLUCOSAMINE M - 413
1q4g_A_4131q4g   A     NAGN-ACETYL-D-GLUCOSAMINE L - 414
1q4g_A_4131q4g   A     NAGN-ACETYL-D-GLUCOSAMINE D - 416
1q4g_A_4131q4g   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 417
1q6o_A_361q6o   A     MGMAGNESIUM ION T - 36
1q6o_A_361q6o   A     LG6L-GULURONIC ACID 6-PHOSPHATE T - 36
1q6o_A_361q6o   A     LG6L-GULURONIC ACID 6-PHOSPHATE I - 37
1q8h_A_271q8h   A     CGUGAMMA-CARBOXY-GLUTAMIC ACID P - 27
1q8h_A_271q8h   A     CGUGAMMA-CARBOXY-GLUTAMIC ACID C - 29
1q8h_A_271q8h   A     CACALCIUM ION C - 29
1q8h_A_271q8h   A     CGUGAMMA-CARBOXY-GLUTAMIC ACID D - 30
1q8h_A_271q8h   A     CACALCIUM ION D - 30
1q8h_A_271q8h   A     CGUGAMMA-CARBOXY-GLUTAMIC ACID A - 33
1q8h_A_271q8h   A     CACALCIUM ION A - 33
1q8h_A_271q8h   A     CACALCIUM ION D - 34
1q8h_A_271q8h   A     CGUGAMMA-CARBOXY-GLUTAMIC ACID F - 38
1qfx_A_2871qfx   A     NAGN-ACETYL-D-GLUCOSAMINE V - 293
1qfx_A_2871qfx   A     NAGN-ACETYL-D-GLUCOSAMINE N - 296
1qfx_A_2871qfx   A     NAGN-ACETYL-D-GLUCOSAMINE A - 297
1qfx_A_2871qfx   A     NAGN-ACETYL-D-GLUCOSAMINE S - 298
1qfx_A_2871qfx   A     NAGN-ACETYL-D-GLUCOSAMINE T - 300
1qfx_A_2871qfx   A     GOLGLYCEROL T - 300
1qfx_A_2871qfx   A     GOLGLYCEROL Q - 304
1qks_A_831qks   A     HECHEME C T - 86
1qks_A_831qks   A     HECHEME C L - 89
1qks_A_831qks   A     HECHEME C Y - 93
1qks_A_831qks   A     HECHEME C L - 94
1qks_A_831qks   A     HECHEME C F - 97
1qks_A_831qks   A     HECHEME C I - 98
1qsa_A_5451qsa   A     GOLGLYCEROL R - 545
1qsa_A_5451qsa   A     GOLGLYCEROL A - 551
1qsa_A_5451qsa   A     GOLGLYCEROL Y - 552
1qsa_A_5451qsa   A     GOLGLYCEROL N - 553
1qsa_A_5451qsa   A     GOLGLYCEROL G - 555
1uum_A_3571uum   A     AFI2-[4-(4-CHLOROPHENYL)CYCLOHEXYLIDENE]-3,4-DIHYDROXY-1(2H)-NAPHTHALENONE L - 359
1uum_A_3571uum   A     FMNFLAVIN MONONUCLEOTIDE I - 360
1uum_A_3571uum   A     AFI2-[4-(4-CHLOROPHENYL)CYCLOHEXYLIDENE]-3,4-DIHYDROXY-1(2H)-NAPHTHALENONE I - 360
1uum_A_3571uum   A     AFI2-[4-(4-CHLOROPHENYL)CYCLOHEXYLIDENE]-3,4-DIHYDROXY-1(2H)-NAPHTHALENONE F - 361
1uum_A_3571uum   A     AFI2-[4-(4-CHLOROPHENYL)CYCLOHEXYLIDENE]-3,4-DIHYDROXY-1(2H)-NAPHTHALENONE G - 363
1uum_A_3571uum   A     AFI2-[4-(4-CHLOROPHENYL)CYCLOHEXYLIDENE]-3,4-DIHYDROXY-1(2H)-NAPHTHALENONE P - 364
1uum_A_3571uum   A     AFI2-[4-(4-CHLOROPHENYL)CYCLOHEXYLIDENE]-3,4-DIHYDROXY-1(2H)-NAPHTHALENONE P - 365
1vhn_A_2401vhn   A     MSESELENOMETHIONINE T - 246
1vhn_A_2401vhn   A     MSESELENOMETHIONINE F - 247
1vhn_A_2401vhn   A     MSESELENOMETHIONINE E - 248
1vhn_A_2401vhn   A     MSESELENOMETHIONINE H - 250
1vhn_A_2401vhn   A     MSESELENOMETHIONINE L - 251
1vhn_A_2401vhn   A     MSESELENOMETHIONINE L - 254
1vhn_A_2401vhn   A     MSESELENOMETHIONINE K - 262
1vhn_A_2401vhn   A     MSESELENOMETHIONINE A - 263
1vhn_A_2401vhn   A     MSESELENOMETHIONINE V - 264
1vhn_A_2401vhn   A     MSESELENOMETHIONINE V - 265
1via_A_471via   A     MSESELENOMETHIONINE E - 61
1via_A_471via   A     MSESELENOMETHIONINE Q - 62
1via_A_471via   A     MSESELENOMETHIONINE E - 63
1via_A_471via   A     MSESELENOMETHIONINE Q - 64
2cev_A_1952cev   A     GAIGUANIDINE M - 195
2cev_A_1952cev   A     GAIGUANIDINE H - 196
2cev_A_1952cev   A     GAIGUANIDINE E - 197
2cev_A_1952cev   A     GAIGUANIDINE D - 199
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h0c_A_2661h0c   A AC5GOL BINDING SITE FOR CHAIN AQ - 290
1h0c_A_2661h0c   A AC5GOL BINDING SITE FOR CHAIN AE - 293
1h16_A_1821h16   A PG1PG4 BINDING SITE FOR CHAIN AA - 198
1h16_A_1821h16   A PG1PG4 BINDING SITE FOR CHAIN AQ - 199
1o82_A_511o82   A AC3SO4 BINDING SITE FOR CHAIN DR - 65
1uum_A_3571uum   A AC3AFI BINDING SITE FOR CHAIN AL - 359
1uum_A_3571uum   A AC3AFI BINDING SITE FOR CHAIN AI - 360
1uum_A_3571uum   A AC3AFI BINDING SITE FOR CHAIN AP - 364

Clusters included in this Subclass
CLUSTER: HH.0.9
CLUSTER: HH.1.12
CLUSTER: HH.1.88
CLUSTER: HH.1.89
CLUSTER: HH.2.154
CLUSTER: HH.2.173
CLUSTER: HH.2.19
CLUSTER: HH.2.250
CLUSTER: HH.2.35
CLUSTER: HH.3.35
CLUSTER: HH.4.115
CLUSTER: HH.4.89