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Information on SUBCLASS 4.2.2
Subclass Accession number: 1783
Subclass: 4.2.2 PSSM
Type: AR beta-beta link
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005507 (>75 %)  
SCOP : 49502 (>75 %)  49503 (>75 %)  49550 (>75 %)  
 Number of loops: 21

Average sequence ID (%) : 9.6 +/- 13.5
Average RMSD (Å) : 0.605 +/- 0.254

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: hXhpXhXX
(φψ)-conformation: bbaaapbb
Pattern: xx[afilmvy]x[agimptv][dehknprst][cdhknqstw][afikmtv]xx
Conservation:-1.000-0.5111.677-0.5850.1300.509-0.4331.353-1.086-1.054
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8i_*_1911a8i   -191199.KARPEFTLP.EE-GGG-EE.bxbaaaxbx
1b9m_A_1771b9m   A180189ILLKAPWVGIEEE-GGG-EEbbbxaaabxb
1b9m_A_2461b9m   A249258AYFNADSVIIEEE-GGG-EExbbxaaaxbx
1dpt_A_951dpt   A100109FPLESWQIGKEEE-GGG-EEbxbbaaabxb
1fjr_A_111fjr   A1118..VDISAAQK..EE-TTSEE..bxaaaxxx
1g29_1_3501g29   1353362VVFDMKKIHIEEE-GGG-EEbbbxaaaxbb
1gd0_A_941gd0   A99108YDMNAANVGWEE--GGG-EEbxxxaaabxb
1h6f_A_2491h6f   A250259TYLFPETEFIEEE-GGG-EEbbbbaaaxbb
1h9k_A_1261h9k   A129138AVIKASNVILEEE-GGG-EExbbxaaabxb
1h9k_A_541h9k   A5766AVVKAPWVLLEEE-GGG-EEbbbxaaaxxb
1hfo_A_941hfo   A99108VNLNGDDVGWEE--GGG-EEbxxxaaabxb
1itv_A_1291itv   A129137.MVDPRSASE.EE-GGG-EE.bbxaaapbx
1jkg_B_4721jkg   B472481TQHDVNSFVVEEE-GGG-EEbbxxaaapbb
1jyk_A_2041jyk   A207216EELEGNSIYEEE--TTSEEEbxxxaaabbx
1k8k_A_1841k8k   A184192.YVIGSCIKH.EE-GGG-EE.bxxaaaxbb
1otf_A_401otf   A4453TEMPKNHFGIEEE-GGG-EEbxbxaaabbb
1oxx_K_3371oxx   K340349VYVRKDKIKVEEE-GGG-EEbbbxaaaxbb
1p9r_A_3831p9r   A394403RTLCPDCKEPEEE-TTT-EExxpxaaaxbw
1qz5_A_1691qz5   A169177.YALPHAIMR.EE-GGG-EE.bxbaaaxbb
1svb_*_1261svb   -130139HVYDANKIVYEE--TTT-EEbbxbaaaxbb
3vub_*_593vub   -6170WRMMTTDMASEEE-GGG-EEbbxxaaapbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b9m_A_1771b9m   A     MSESELENOMETHIONINE V - 187
1b9m_A_1771b9m   A     MSESELENOMETHIONINE G - 188
1b9m_A_1771b9m   A     MSESELENOMETHIONINE I - 189
1b9m_A_2461b9m   A     MSESELENOMETHIONINE V - 247
1b9m_A_2461b9m   A     MSESELENOMETHIONINE T - 248
1b9m_A_2461b9m   A     MSESELENOMETHIONINE A - 249
1g29_1_3501g29   1     MGMAGNESIUM ION K - 359
1gd0_A_941gd0   A     CITCITRIC ACID N - 97
1gd0_A_941gd0   A     CITCITRIC ACID Y - 99
1h9k_A_541h9k   A     WO4TUNGSTATE(VI)ION P - 62
1h9k_A_541h9k   A     WO4TUNGSTATE(VI)ION V - 64
1h9k_A_541h9k   A     WO4TUNGSTATE(VI)ION L - 65
1h9k_A_541h9k   A     WO4TUNGSTATE(VI)ION L - 66
1h9k_A_1261h9k   A     PO4PHOSPHATE ION I - 131
1h9k_A_1261h9k   A     PO4PHOSPHATE ION K - 132
1h9k_A_1261h9k   A     PO4PHOSPHATE ION A - 133
1h9k_A_1261h9k   A     PO4PHOSPHATE ION S - 134
1h9k_A_1261h9k   A     PO4PHOSPHATE ION N - 135
1jyk_A_2041jyk   A     MSESELENOMETHIONINE L - 209
1jyk_A_2041jyk   A     MSESELENOMETHIONINE S - 213
1jyk_A_2041jyk   A     MSESELENOMETHIONINE I - 214
1oxx_K_3371oxx   K     IODIODIDE ION Y - 341
1oxx_K_3371oxx   K     IODIODIDE ION V - 349
1oxx_K_3371oxx   K     IODIODIDE ION F - 350
1oxx_K_3371oxx   K     IODIODIDE ION E - 351
1p9r_A_3831p9r   A     MSESELENOMETHIONINE L - 388
1p9r_A_3831p9r   A     ZNZINC ION C - 397
1p9r_A_3831p9r   A     ZNZINC ION P - 398
1p9r_A_3831p9r   A     ZNZINC ION D - 399
1p9r_A_3831p9r   A     ZNZINC ION C - 400
1p9r_A_3831p9r   A     ZNZINC ION K - 401
1qz5_A_1691qz5   A     KABKABIRAMIDE C Y - 169
1qz5_A_1691qz5   A     KABKABIRAMIDE C A - 170
1qz5_A_1691qz5   A     HIC4-METHYL-HISTIDINE R - 177
1qz5_A_1691qz5   A     CACALCIUM ION R - 177
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h9k_A_541h9k   A WO2WO4 BINDING SITE FOR CHAIN A SYMMETRY RELATED SUBUNITS CONTRIBUTE TO THE BINDING SITEK - 60
1h9k_A_541h9k   A WO2WO4 BINDING SITE FOR CHAIN A SYMMETRY RELATED SUBUNITS CONTRIBUTE TO THE BINDING SITEA - 61

Clusters included in this Subclass
CLUSTER: AR.4.33
CLUSTER: AR.5.7
CLUSTER: AR.6.2