Logo
Information on SUBCLASS 4.5.1
Subclass Accession number: 1805
Subclass: 4.5.1 PSSM
Type: AR beta-beta link
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 48725 (>75 %)  
 Number of loops: 20

Average sequence ID (%) : 6.4 +/- 10.7
Average RMSD (Å) : 0.840 +/- 0.204

Consensus geometry
d (Å): 13 delta (°): 0-45 theta (°): 45-90 rho (°): 180-225
Consensus Sequence: XhXXXXhX
(φψ)-conformation: bbpabpbb
Pattern: xxxxxx[cgilmvy]x
Conservation:-0.051-0.602-0.1001.0570.293-0.7561.634-1.477
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bco_*_2651bco   -271278YLHNVFVREE-SB-EEbxxabxbx
1ej8_A_1491ej8   A151158HKFDEPIEEE--S-EEbbxaxxbx
1f7d_A_181f7d   A2027LLAAKEIHEE-SS-EEbbxabxbb
1hyo_A_2571hyo   A258265TISPWVVPEE-S-BEEbbxaxxxx
1i52_A_1311i52   A135142APVRDTMKEE--S-EEbxxaxxbb
1ia9_A_15981ia9   A15991606SWSQLGLCEE-SS-EEbxxaxxbx
1ji6_A_6101ji6   A612619ATTNSNMGEE-S--EEbbbabbbb
1lwd_A_51lwd   A512IKVAKPVVEE-SS-EExxbabxbx
1m44_A_1321m44   A132139LPWHGPTSEE--S-EEbxxaxxxb
1nni_1_1281nni   1128135NVIPKQLVEE-S--EEbxxapbbb
1obd_A_301obd   A3441VATDRISAEE-S--EEbxxaxbbb
1p42_A_1301p42   A130137FVVEEPIIEE--S-EExbxabwbb
1pam_A_801pam   A8188ENIYSVINEE----EEpbxapxbx
1pbg_A_2931pbg   A296303INYYMSDWEE-S--EEbbbabbbb
1q5h_A_241q5h   A2734LYSAYDYTEE-SS-EEbbxabxbb
1s18_A_2101s18   A211218LIHESACWEE---EEEbbbabbbb
1s18_A_731s18   A7683EWDKDHGVEE-SS-EEbbpabbbx
1s5d_A_1341s5d   A134141VLDEQLHREE-S--EExxxaxxxx
1six_A_271six   A2936LYSAEDVEEE-SS-EExxxabxbb
1uyr_A_18871uyr   A18931900GVETRTVEEE--S-EEbbxaxxxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1hyo_A_2571hyo   A     MGMAGNESIUM ION T - 257
1hyo_A_2571hyo   A     MGMAGNESIUM ION T - 258
1ia9_A_15981ia9   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE K - 1608
1nni_1_1281nni   1     MSESELENOMETHIONINE N - 128
1nni_1_1281nni   1     MSESELENOMETHIONINE V - 129
1obd_A_301obd   A     ATPADENOSINE-5'-TRIPHOSPHATE L - 31
1obd_A_301obd   A     ATPADENOSINE-5'-TRIPHOSPHATE F - 33
1q5h_A_241q5h   A     DUDDEOXYURIDINE-5'-DIPHOSPHATE D - 26
1s18_A_731s18   A     TMNTRIS(HYDROXYMETHYL)AMINOMETHANE D - 78
1s18_A_731s18   A     TMNTRIS(HYDROXYMETHYL)AMINOMETHANE L - 84
1s18_A_2101s18   A     CACALCIUM ION E - 214
1s18_A_2101s18   A     CACALCIUM ION S - 215
1s18_A_2101s18   A     TMNTRIS(HYDROXYMETHYL)AMINOMETHANE C - 217
1s18_A_2101s18   A     TMNTRIS(HYDROXYMETHYL)AMINOMETHANE W - 218
1six_A_271six   A     MGMAGNESIUM ION D - 28
1six_A_271six   A     DUP2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE D - 28
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1obd_A_301obd   A AC2ATP BINDING SITE FOR CHAIN AL - 31
1obd_A_301obd   A AC2ATP BINDING SITE FOR CHAIN AF - 33

Clusters included in this Subclass
CLUSTER: AR.3.86
CLUSTER: AR.4.25
CLUSTER: AR.5.14