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PDB code:

Information on SUBCLASS 4.2.3

Subclass Accession number: 3878 Subclass: 4.2.3 Type: AR beta-beta link DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 14 Average sequence ID (%) : 17.0 +/- 20.4 Average RMSD (Å) : 0.607 +/- 0.325 Consensus geometry d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 225-270

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1acc_*_106	1acc	-	106	115	IRLEKGRLYQ	EEE-TT-EEE	bxbxxvbxbx
1aoz_A_206	1aoz	A	206	215	FHVSPKKTYR	EEE-TT-EEE	xbbxplbbbx
1c5d_B_11	1c5d	B	11	19	.LVQPSQTLS	.EE-TTS-EE	.bbxpgxbxb
1e30_A_63	1e30	A	64	73	LEIPAGATVD	EEE-TT-EEE	bbbxxvxxbx
1gw0_A_216	1gw0	A	217	226	VTLTPGKRHR	EEE-TT-EEE	bbxxpvbxbx
1gyc_A_187	1gyc	A	188	197	INVQHGKRYR	EEE-TT-EEE	bxbbpvbbbx
1hfu_A_186	1hfu	A	187	196	VNVEQGKKYR	EEE-TT-EEE	bxbbpvxbbx
1kya_A_187	1kya	A	188	197	ISVTPGKRYR	EEE-TT-EEE	bxbbpvxbbx
1lml_*_533	1lml	-	533	542	TNCTPGLRVE	EE--TT-EEE	bpbxpgxbbx
1mda_H_57	1mda	H	62	71	SLGAFLSLAV	EEE-TT-EEE	bbbFxlxbxb
1o54_A_23	1o54	A	26	35	VDLEKDKKLH	EE--TT-EEE	bxxbpvxbbb
1q8i_A_264	1q8i	A	266	275	FAQAKGRLII	EEEBTTBEEE	bxbbpvbxbb
1qht_A_247	1qht	A	249	258	AVEVKGRIHF	EEE-TTSEEE	bbbbpvbbxx
2plt_*_18	2plt	-	19	28	LTIKSGETVN	EEE-TT-EEE	bbbxpvxbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1gw0_A_216	1gw0	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 216
1gw0_A_216	1gw0	A	NAGN-ACETYL-D-GLUCOSAMINE	V - 217
1gw0_A_216	1gw0	A	NAGN-ACETYL-D-GLUCOSAMINE	T - 218
1gw0_A_216	1gw0	A	NAGN-ACETYL-D-GLUCOSAMINE	L - 227
2plt_*_18	2plt	*	CACALCIUM ION	T - 18

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gw0_A_216	1gw0	A	BC6NAG BINDING SITE FOR CHAIN A	N - 216
1gw0_A_216	1gw0	A	BC6NAG BINDING SITE FOR CHAIN A	T - 218
1lml_*_533	1lml	*	CA3CARBOHYDRATE BINDING SITE.	N - 534

Clusters included in this Subclass

CLUSTER: AR.5.24

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