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Information on SUBCLASS 2.2.7
Subclass Accession number: 477
Subclass: 2.2.7 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 12

Average sequence ID (%) : 9.0 +/- 11.4
Average RMSD (Å) : 0.450 +/- 0.131

Consensus geometry
d (Å): 5 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XpXpXh
(φψ)-conformation: bbaabb
Pattern: [fiv]x[degqs]x[DEGKRT]x[dhnqrsty]x[afiklv]xx[adegknrt]
Conservation:2.7680.025-0.158-0.8330.684-0.7720.108-0.5880.391-0.871-0.399-0.355
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a49_A_1801a49   A184195VKQKGPDFLVTEEEEE-SSEEEEEpabbbaabbbbb
1an8_*_221an8   -2940VNFSTTHTLNIDEEEE-SSEEEEExabbbaabbbbx
1hk9_A_311hk9   A3647IESFDQFVILLKEEEE-SSEEEEExabbbaabbxbb
1i8d_A_81i8d   A1425SIDEKPNFRTHVEEEE-SSEEEEEbbbxbaabbbbb
1jj2_L_1131jj2   L119130SVGEDGRHKWHEEEEE-SSEEEEExaebbaabbbbb
1kq1_A_311kq1   A3647IEEYDKYVVSLNEEEE-SSEEEEExabbbaabbbbx
1kzl_A_471kzl   A5162VTDFDRYHFTVGEEEE-SSEEEEExabbbaabbbbb
1oz2_A_4661oz2   A471482VEDVEDHRIKIHEEEE-SSEEEEExabbbaabbbxb
1phk_*_191phk   -2435ILGRGVSSVVRREEEE-SSEEEEExabbbaabbbbx
1s5u_A_751s5u   A8293ITSMRGTSLVFTEEEE-SSEEEEExabbbaabbbbb
1uwv_A_491uwv   A5465VTEDKKQYARAKEEEE-SSEEEEExabbbaabbbbb
1vdc_*_941vdc   -94105FKLFTDSKAILAEEEE-SSEEEEEpbbbbaabbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1kzl_A_471kzl   A     CRM3-[8-((2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL)-2,4,7-TRIOXO-1,3,8-TRIHYDROPTERIDIN-6-YL]PROPANOIC ACID T - 47
1kzl_A_471kzl   A     HGMERCURY (II) ION C - 48
1kzl_A_471kzl   A     CRM3-[8-((2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL)-2,4,7-TRIOXO-1,3,8-TRIHYDROPTERIDIN-6-YL]PROPANOIC ACID C - 48
1kzl_A_471kzl   A     HGMERCURY (II) ION L - 49
1kzl_A_471kzl   A     CRM3-[8-((2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL)-2,4,7-TRIOXO-1,3,8-TRIHYDROPTERIDIN-6-YL]PROPANOIC ACID L - 49
1kzl_A_471kzl   A     CRM3-[8-((2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL)-2,4,7-TRIOXO-1,3,8-TRIHYDROPTERIDIN-6-YL]PROPANOIC ACID T - 50
1kzl_A_471kzl   A     CRM3-[8-((2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL)-2,4,7-TRIOXO-1,3,8-TRIHYDROPTERIDIN-6-YL]PROPANOIC ACID V - 51
1kzl_A_471kzl   A     CRM3-[8-((2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL)-2,4,7-TRIOXO-1,3,8-TRIHYDROPTERIDIN-6-YL]PROPANOIC ACID V - 61
1kzl_A_471kzl   A     CRM3-[8-((2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL)-2,4,7-TRIOXO-1,3,8-TRIHYDROPTERIDIN-6-YL]PROPANOIC ACID G - 62
1kzl_A_471kzl   A     CRM3-[8-((2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL)-2,4,7-TRIOXO-1,3,8-TRIHYDROPTERIDIN-6-YL]PROPANOIC ACID I - 63
1oz2_A_4661oz2   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID R - 467
1oz2_A_4661oz2   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID E - 472
1oz2_A_4661oz2   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID D - 473
1oz2_A_4661oz2   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID K - 480
1oz2_A_4661oz2   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID F - 483
1phk_*_191phk   *     ATPADENOSINE-5'-TRIPHOSPHATE L - 25
1phk_*_191phk   *     ATPADENOSINE-5'-TRIPHOSPHATE G - 26
1phk_*_191phk   *     ATPADENOSINE-5'-TRIPHOSPHATE R - 27
1phk_*_191phk   *     ATPADENOSINE-5'-TRIPHOSPHATE G - 28
1phk_*_191phk   *     ATPADENOSINE-5'-TRIPHOSPHATE V - 29
1phk_*_191phk   *     ATPADENOSINE-5'-TRIPHOSPHATE S - 30
1phk_*_191phk   *     ATPADENOSINE-5'-TRIPHOSPHATE S - 31
1phk_*_191phk   *     ATPADENOSINE-5'-TRIPHOSPHATE V - 32
1phk_*_191phk   *     ATPADENOSINE-5'-TRIPHOSPHATE V - 33
1s5u_A_751s5u   A     EDO1,2-ETHANEDIOL T - 88
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1an8_*_221an8   * ZNBTHIS SITE ALSO INCLUDES HIS 35 AND GLU 54 FROM A SYMMETRY-RELATED MOLECULE.H - 35

Clusters included in this Subclass
CLUSTER: HA.2.54
CLUSTER: HA.2.68
CLUSTER: HA.3.145
CLUSTER: HA.3.46
CLUSTER: HA.4.110
CLUSTER: HA.4.70
CLUSTER: HA.4.82