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Information on SUBCLASS 1.2.6
Subclass Accession number: 5282
Subclass: 1.2.6 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 41

Average sequence ID (%) : 11.7 +/- 15.2
Average RMSD (Å) : 0.522 +/- 0.171

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: pXXXh
(φψ)-conformation: aalbb
Pattern: xx[cdehknqrsty]x[degknqrs]x[acfgilvy]x
Conservation:-0.582-0.6220.603-0.7272.021-0.519-0.174-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b65_A_901b65   A9399IEDGGYF.HHHH-EE.aaaavbb.
1brw_A_1361brw   A143150VNENGIAIHHHHSEEEaaaavbbb
1cz3_A_251cz3   A3542TTEIGNVVHHHHTEEEaaaavbbb
1e5m_A_3491e5m   A360366AIAEDKV.HHHHTEE.aaaalbb.
1ejd_A_971ejd   A101108VARFGQGQHHHHSEEEaaaavbbb
1fvr_A_10071fvr   A10091015SLNYSVY.HHHH-EE.aaaalbb.
1g8p_A_1581g8p   A167174VAQSGENVHHHHSEEEaaaavbbb
1g8t_A_791g8t   A8087NAALKVDRHHHH-EEEaaaalbbx
1gai_*_3181gai   -335342WDKQGSLEHHHHTEEEaaaavbbb
1h0c_A_3321h0c   A340346IDHFDIE.HHHH-EE.aaaavbx.
1h4v_B_3861h4v   B388395ELRAGEVTHHHHTEEEaaaavbbb
1hc7_A_3521hc7   A354361DLEGGQAVHHHTTEEEaaaavbbx
1ipa_A_201ipa   A2330RDSQRRFLHHHHTEEEaaaalbbx
1jce_A_1841jce   A191197RETYRVA.HHHH-EE.aaaavbx.
1jln_A_4851jln   A500506LKEEGVV.HHHHSEE.aaaavbb.
1k2e_A_381k2e   A4754EEETGIVVHHHHSEEEaaaavxxb
1kas_*_3451kas   -356362ALRDQAV.HHHHTEE.aaaalbb.
1kfs_A_7961kfs   A809816AKEQGYVEHHHHSEEEaaaavbbb
1khd_A_1471khd   A154161LDDLNVCFHHHHSEEEaaaavbbb
1lfw_A_2321lfw   A243250LADKELDGHHHHT-EEaaaavbbe
1lla_*_2661lla   -279286SIHLGYVIHHHHTEEEaaaavbbb
1lo7_A_471lo7   A5158VVERGIVGHHHH-EEEaaaavxae
1lp9_F_1341lp9   F137144IANKQKATHHHHSEEEaaaalbbx
1lwd_A_561lwd   A6572TQKYSVAVHHHHSEEEaaaavbbb
1m2o_A_31m2o   A714EDINGVRFHHHHSEEEaaaavbbx
1mbx_C_551mbx   C6572VHYQGKAIHHHHSEEEaaaavbbx
1nk4_A_7441nk4   A757764AKQKGYVTHHHHSEEEaaaavbbb
1nns_A_2861nns   A286293DAKYGFVAHHHHTEEEaaaavxbx
1nv8_A_791nv8   A8087HYILGEKEHHHHTEEEaaaavbbx
1o17_A_1331o17   A140147VNKTNFVFHHHHSEEEaaaavbbb
1obd_A_1271obd   A133139YVKTGTV.HHHHSEE.aaaavbb.
1oga_E_1321oga   E135142ISHTQKATHHHHSEEEaaaavbbb
1oj5_A_3091oj5   A317324VMTRGTASHHHHSEEEaaaavbbb
1olt_A_3651olt   A377384LICNFRLDHHHHSEEEaaaalbbx
1pb1_A_861pb1   A9299IREYRVAIHHHHSEEEaaaagbbb
1pfk_A_1391pfk   A157164SSSHQRISHHHHT-EEaaaalbbb
1pjr_*_1691pjr   -184190LLRNHSL.HHHTTEE.aaaalbb.
1qtm_A_7011qtm   A714721GRRRGYVEHHHHSEEEaaaavbbb
1uou_A_1701uou   A177184LDQAGCCIHHHHSEEEaaaavbbb
1v8g_A_1331v8g   A140147IEELGFGFHHHHSEEEaaaavbbb
1yfo_A_4381yfo   A453459MHSERKV.HHHSSEE.aaaalbb.
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ejd_A_971ejd   A     HAICYCLOHEXYLAMMONIUM ION Q - 106
1ejd_A_971ejd   A     HAICYCLOHEXYLAMMONIUM ION G - 107
1ejd_A_971ejd   A     HAICYCLOHEXYLAMMONIUM ION Q - 108
1g8t_A_791g8t   A     SULSULFATE ANION D - 86
1g8t_A_791g8t   A     SULSULFATE ANION R - 87
1g8t_A_791g8t   A     MO5MAGNESIUM ION, 5 WATERS COORDINATED R - 87
1g8t_A_791g8t   A     SULSULFATE ANION G - 88
1g8t_A_791g8t   A     MO5MAGNESIUM ION, 5 WATERS COORDINATED G - 88
1g8t_A_791g8t   A     SULSULFATE ANION H - 89
1g8t_A_791g8t   A     MO5MAGNESIUM ION, 5 WATERS COORDINATED H - 89
1gai_*_3181gai   *     GACDIHYDRO-ACARBOSE L - 319
1h0c_A_3321h0c   A     GOLGLYCEROL W - 332
1h0c_A_3321h0c   A     GOLGLYCEROL R - 333
1h0c_A_3321h0c   A     GOLGLYCEROL V - 336
1h0c_A_3321h0c   A     GOLGLYCEROL S - 337
1h0c_A_3321h0c   A     GOLGLYCEROL I - 340
1h0c_A_3321h0c   A     GOLGLYCEROL F - 343
1h0c_A_3321h0c   A     GOLGLYCEROL D - 344
1h0c_A_3321h0c   A     GOLGLYCEROL I - 345
1jce_A_1841jce   A     MSESELENOMETHIONINE E - 184
1jce_A_1841jce   A     MSESELENOMETHIONINE A - 185
1jce_A_1841jce   A     MSESELENOMETHIONINE I - 186
1jce_A_1841jce   A     MSESELENOMETHIONINE V - 187
1k2e_A_381k2e   A     CRYPROPANE-1,2,3-TRIOL E - 49
1lo7_A_471lo7   A     4CO4-HYDROXYPHENACYL COENZYME A W - 47
1lo7_A_471lo7   A     4CO4-HYDROXYPHENACYL COENZYME A V - 57
1lo7_A_471lo7   A     4CO4-HYDROXYPHENACYL COENZYME A G - 58
1nv8_A_791nv8   A     SAMS-ADENOSYLMETHIONINE F - 88
1oj5_A_3091oj5   A     IODIODIDE ION R - 311
1oj5_A_3091oj5   A     IODIODIDE ION Q - 312
1oj5_A_3091oj5   A     IODIODIDE ION Q - 315
1pb1_A_861pb1   A     GOLGLYCEROL R - 96
1pfk_A_1391pfk   A     ADPADENOSINE-5'-DIPHOSPHATE R - 154
1pfk_A_1391pfk   A     MGMAGNESIUM ION R - 154
1pfk_A_1391pfk   A     ADPADENOSINE-5'-DIPHOSPHATE S - 158
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h0c_A_3321h0c   A AC3GOL BINDING SITE FOR CHAIN AR - 333
1h0c_A_3321h0c   A AC3GOL BINDING SITE FOR CHAIN AS - 337
1h0c_A_3321h0c   A AC4GOL BINDING SITE FOR CHAIN AF - 343
1obd_A_1271obd   A AC3SO4 BINDING SITE FOR CHAIN AG - 127
1obd_A_1271obd   A AC3SO4 BINDING SITE FOR CHAIN AS - 128

Clusters included in this Subclass
CLUSTER: HE.0.12
CLUSTER: HE.0.6
CLUSTER: HE.1.14
CLUSTER: HE.1.18
CLUSTER: HE.2.11