ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 2.1.7

Subclass Accession number: 5327
Subclass: 2.1.7

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 18

Average sequence ID (%) : 13.2 +/- 15.4
Average RMSD (Å) : 0.678 +/- 0.183

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 90-135

rho (°): 135-180

Consensus Sequence:	XpcXXh
(φψ)-conformation:	aalpbb

Pattern:	x	[afilmy]	x	[aefkl]	x	[ADGKNQ]	x	x	[afilmtv]	x	x
Conservation:	-0.464	1.348	-0.650	0.738	-0.889	1.531	-0.603	-0.970	1.262	-0.897	-0.406

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1e5x_A_366	1e5x	A	371	381	ALKKCNGIVEE	HHHHTT--EEE	aaaaalxbbbb
1ebf_A_153	1ebf	A	158	168	EIIQTGDEVEK	HHHHHT--EEE	aaaaagxbxab
1ef8_A_154	1ef8	A	159	168	ELIFTASPIT.	HHHHH---EE.	aaaaaUxxbx.
1ey3_A_185	1ey3	A	190	199	EMVLTGDRIS.	HHHHH---EE.	aaaaavxxbx.
1f8r_A_96	1f8r	A	101	111	YIRKFDLRLNE	HHHHTT--EEE	aaaaalxbbbp
1fnn_A_108	1fnn	A	118	128	HLRERDLYMFL	HHHHTT--EEE	aaaaalbbbxx
1g5h_A_419	1g5h	A	420	430	TTLENGLIQLR	HHHHH---EEE	aaaaavxbxbb
1lwd_A_236	1lwd	A	238	248	DFDKYKIWYEH	HHHHTT--EEE	aaaaalbbbbx
1m66_A_107	1m66	A	112	122	YAKEKQVPVLV	HHHHHT--EEE	aaaaalxwbbx
1mhy_D_404	1mhy	D	407	417	WLLANGHDVYI	HHHHTT---EE	aaaaavbxbbb
1o63_A_18	1o63	A	18	28	YLKKTGVIFER	HHHHHT--EEE	aaaaagxbxab
1o7q_A_115	1o7q	A	121	131	YYAKQKITVGL	HHHHHT--EEE	aaaaalxbbxb
1o8u_A_166	1o8u	A	171	180	YFLLTGQELD.	HHHHH---EE.	aaaaavpbxx.
1p1j_A_76	1p1j	A	86	96	LANKHNVEFQT	HHHHTT--EEE	aaaaalxxbxb
1qba_*_246	1qba	-	255	265	RFALLGVPVQT	HHHHTT--EEE	aaaaavbxxba
1reo_A_96	1reo	A	101	111	YIRKFGLQLNE	HHHHTT--EEE	aaaaavxxbbx
1s3e_A_66	1s3e	A	71	81	LAKELGLETYK	HHHHTT--EEE	aaaaavxbbbx
1szw_A_283	1szw	A	288	298	LLVREKVEAAR	HHHHTT-B-EE	aaaaalxxpbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1e5x_A_366	1e5x	A	MSESELENOMETHIONINE	A - 371
1e5x_A_366	1e5x	A	MSESELENOMETHIONINE	L - 372
1e5x_A_366	1e5x	A	MSESELENOMETHIONINE	C - 375
1e5x_A_366	1e5x	A	MSESELENOMETHIONINE	N - 376
1e5x_A_366	1e5x	A	MSESELENOMETHIONINE	G - 377
1e5x_A_366	1e5x	A	MSESELENOMETHIONINE	I - 378
1e5x_A_366	1e5x	A	MSESELENOMETHIONINE	V - 379
1ey3_A_185	1ey3	A	DAK4-(N,N-DIMETHYLAMINO)CINNAMOYL-COA	R - 197
1f8r_A_96	1f8r	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 110
1fnn_A_108	1fnn	A	MGMAGNESIUM ION	D - 131
1fnn_A_108	1fnn	A	ADPADENOSINE-5'-DIPHOSPHATE	D - 131
1g5h_A_419	1g5h	A	MSESELENOMETHIONINE	T - 420
1g5h_A_419	1g5h	A	MSESELENOMETHIONINE	N - 424
1g5h_A_419	1g5h	A	MSESELENOMETHIONINE	G - 425
1g5h_A_419	1g5h	A	MSESELENOMETHIONINE	L - 426
1g5h_A_419	1g5h	A	MSESELENOMETHIONINE	I - 427
1g5h_A_419	1g5h	A	MSESELENOMETHIONINE	Q - 428
1g5h_A_419	1g5h	A	MSESELENOMETHIONINE	L - 429
1g5h_A_419	1g5h	A	MSESELENOMETHIONINE	R - 430
1g5h_A_419	1g5h	A	MSESELENOMETHIONINE	S - 431
1o63_A_18	1o63	A	MSESELENOMETHIONINE	Y - 18
1o63_A_18	1o63	A	MSESELENOMETHIONINE	L - 19
1o63_A_18	1o63	A	MSESELENOMETHIONINE	K - 20
1o63_A_18	1o63	A	MSESELENOMETHIONINE	K - 21
1o63_A_18	1o63	A	MSESELENOMETHIONINE	F - 26
1o63_A_18	1o63	A	MSESELENOMETHIONINE	E - 29
1o7q_A_115	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	V - 133
1o7q_A_115	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	F - 134
1o7q_A_115	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	A - 135
1p1j_A_76	1p1j	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	N - 76
1p1j_A_76	1p1j	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	N - 77
1p1j_A_76	1p1j	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	G - 78
1szw_A_283	1szw	A	MSESELENOMETHIONINE	L - 285
1szw_A_283	1szw	A	MSESELENOMETHIONINE	R - 299

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1o7q_A_115	1o7q	A	AC6UDP BINDING SITE FOR CHAIN A	F - 134
1o7q_A_115	1o7q	A	AC6UDP BINDING SITE FOR CHAIN A	A - 135

Clusters included in this Subclass