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Information on SUBCLASS 2.2.4
Subclass Accession number: 5350
Subclass: 2.2.4 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 35

Average sequence ID (%) : 14.7 +/- 16.7
Average RMSD (Å) : 0.706 +/- 0.192

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: XXXpXh
(φψ)-conformation: aapabb
Pattern: xx[afilmpvwy][afilmvy][aegknqrst]xx[dehknq]x[acfilpvwy][iltvw]
Conservation:-0.943-0.215-0.482-0.1800.080-0.646-0.4112.650-0.7960.2400.703
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
16pk_*_14516pk   -153163KILASYGDVYIHHHHTT-SEEEaaaaaababbb
1ax4_A_2461ax4   A251261FDMYKYADALTHHHGGG-SEEEaaaaaababbb
1bg6_*_691bg6   -7080GLAVKDADVILHHHHTT-SEEEaaaaaaxabbb
1brm_A_601brm   A6070LEALKALDIIVHHHHHT-SEEEaaaaaaxabbb
1d2k_A_2241d2k   A225235AEMDKYLDFWNHHHHTT-SEEEaaaaaaxabbb
1ff9_A_591ff9   A6373DAEVAKHDLVIHHHHTTSSEEEaaaaaababbb
1fzq_A_751fzq   A7989RSYFENTDILIHHHHTT-SEEEaaaaaaxabbb
1g3q_A_1251g3q   A128138MSAMLSGEEALHHHHTT-SEEEaaaaaaxabbb
1gc5_A_2271gc5   A228238EEITRNVELAIHHHHTT-SEEEaaaaaababbb
1i1q_B_371i1q   B4050IDRLATMKNPVHHHHTT-SSEEaaaaaaxabwb
1j6u_A_3591j6u   A361371AKALQLADEVVHHHHTTSSEEEaaaaaaxabbb
1j7x_A_1351j7x   A135145WEPITITENLIHHHHTT-SEEEaaaaaaxabbb
1jnd_A_2071jnd   A208218PALNGLVDFVNHHHHTT-SEEEaaaaaababbb
1jsm_A_981jsm   A102112KHLLSSTNHFEHHHHTT-SEEEaaaaaababbx
1k1e_A_1291k1e   A129138IYVKNAVDHV.HHHHTTSSEE.aaaaaaxabx.
1ka9_H_831ka9   H8392VGMQVLYEGS.HHHHTTSSEE.aaaaaaxabb.
1l2l_A_2221l2l   A223233EEIAKRSELAIHHHHTT-SEEEaaaaaababbb
1l2t_A_2061l2t   A206216INVARFGERIIHHHHTTSSEEEaaaaaaxabbx
1l7d_A_611l7d   A6272AQALSQADVVWHHHHSS-SEEEaaaaaaxabbb
1moq_*_4531moq   -458468AEDFSDKHHALHHHHTT-SEEEaaaaaaxabbb
1mr3_F_761mr3   F7989RHYYRNTEGVIHHHHHT-SEEEaaaaaaxabbb
1nwc_A_611nwc   A6171IEELKKLDIIVHHHHTT-SEEEaaaaaaxabbb
1oc2_A_661oc2   A7080DKLAAKADAIVHHHHTT-SEEEaaaaaababbb
1pbt_A_1721pbt   A172182FRALNTSLYVLHHHHTT-SEEEaaaaaaxabbb
1php_*_1281php   -132142KAFAELADLYVHHHHTT-SEEEaaaaaababbb
1qpg_*_1411qpg   -149159HELSSLADVYIHHHHHT-SEEEaaaaaababbb
1qyc_A_681qyc   A7282VEAVKNVDVVIHHHHHT-SEEEaaaaaababbb
1rcu_A_901rcu   A91101FVLLRNADVVVHHHHTT-SEEEaaaaaababbb
1tpl_A_2371tpl   A242252HEMFSYADGCTHHHHHTSSEEEaaaaaababbb
1ual_A_961ual   A99109VTELAQNQKLIHHHHTT-SEEEaaaaaaxabbb
1uqt_A_1691uqt   A173183LEQLCDYDLLGHHHHTTSSEEEaaaaaaxabbb
1vjd_A_1431vjd   A151161ASLSKLGDVYVHHHTTS-SEEEaaaaaababbb
1vpe_*_1281vpe   -132142KFWASLADIHVHHHHTT-SEEEaaaaaababbb
2dnj_A_192dnj   A2636VRIVRRYDIVLHHHHHT-SEEEaaaaaababbx
5nul_*_405nul   -4050IDELLNEDILIHHHHTT-SEEEaaaaaaxabxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ax4_A_2461ax4   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) M - 262
1ax4_A_2461ax4   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) S - 263
1fzq_A_751fzq   A     GDPGUANOSINE-5'-DIPHOSPHATE D - 93
1g3q_A_1251g3q   A     ADPADENOSINE-5'-DIPHOSPHATE V - 140
1j7x_A_1351j7x   A     MSESELENOMETHIONINE I - 146
1l2t_A_2061l2t   A     IOH2-PROPANOL, ISOPROPANOL N - 207
1l2t_A_2061l2t   A     IOH2-PROPANOL, ISOPROPANOL V - 208
1l2t_A_2061l2t   A     IOH2-PROPANOL, ISOPROPANOL F - 211
1l2t_A_2061l2t   A     ATPADENOSINE-5'-TRIPHOSPHATE L - 218
1mr3_F_761mr3   F     EGLETHYLENE GLYCOL L - 77
1mr3_F_761mr3   F     CRYPROPANE-1,2,3-TRIOL W - 78
1mr3_F_761mr3   F     EGLETHYLENE GLYCOL W - 78
1mr3_F_761mr3   F     PDO1,3-PROPANDIOL W - 78
1mr3_F_761mr3   F     EGLETHYLENE GLYCOL R - 79
1mr3_F_761mr3   F     EGLETHYLENE GLYCOL H - 80
1mr3_F_761mr3   F     EGLETHYLENE GLYCOL Y - 81
1mr3_F_761mr3   F     CRYPROPANE-1,2,3-TRIOL Y - 82
1mr3_F_761mr3   F     EGLETHYLENE GLYCOL Y - 82
1mr3_F_761mr3   F     CRYPROPANE-1,2,3-TRIOL R - 83
1mr3_F_761mr3   F     CRYPROPANE-1,2,3-TRIOL N - 84
1mr3_F_761mr3   F     EGLETHYLENE GLYCOL N - 84
1mr3_F_761mr3   F     CRYPROPANE-1,2,3-TRIOL T - 85
1mr3_F_761mr3   F     EGLETHYLENE GLYCOL T - 85
1mr3_F_761mr3   F     EGLETHYLENE GLYCOL E - 86
1mr3_F_761mr3   F     EGLETHYLENE GLYCOL G - 87
1mr3_F_761mr3   F     G3DGUANOSINE-3'-MONOPHOSPHATE-5'-DIPHOSPHATE V - 91
1mr3_F_761mr3   F     EOHETHANOL I - 92
1mr3_F_761mr3   F     G3DGUANOSINE-3'-MONOPHOSPHATE-5'-DIPHOSPHATE D - 93
1mr3_F_761mr3   F     EGLETHYLENE GLYCOL D - 93
1mr3_F_761mr3   F     EOHETHANOL D - 93
1oc2_A_661oc2   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE H - 81
1pbt_A_1721pbt   A     FMTFORMIC ACID A - 174
1pbt_A_1721pbt   A     FMTFORMIC ACID T - 177
1pbt_A_1721pbt   A     MSESELENOMETHIONINE F - 183
1pbt_A_1721pbt   A     MSESELENOMETHIONINE L - 184
1pbt_A_1721pbt   A     MSESELENOMETHIONINE I - 185
1rcu_A_901rcu   A     MSESELENOMETHIONINE S - 90
1rcu_A_901rcu   A     MSESELENOMETHIONINE F - 91
1rcu_A_901rcu   A     MSESELENOMETHIONINE V - 92
1rcu_A_901rcu   A     MSESELENOMETHIONINE L - 93
1rcu_A_901rcu   A     MSESELENOMETHIONINE R - 95
1rcu_A_901rcu   A     MSESELENOMETHIONINE D - 98
2dnj_A_192dnj   A     NAGN-ACETYL-D-GLUCOSAMINE A - 19
2dnj_A_192dnj   A     NAGN-ACETYL-D-GLUCOSAMINE T - 20
2dnj_A_192dnj   A     NAGN-ACETYL-D-GLUCOSAMINE L - 21
5nul_*_405nul   *     FMNFLAVIN MONONUCLEOTIDE C - 53
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ax4_A_2461ax4   A LPAPYRIDOXAL 5-PHOSPHATE BINDING SITE.S - 263

Clusters included in this Subclass
CLUSTER: HE.3.38
CLUSTER: HE.4.27
CLUSTER: HE.4.342
CLUSTER: HE.5.17
CLUSTER: HE.5.247