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Information on SUBCLASS 3.2.1
Subclass Accession number: 574
Subclass: 3.2.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 46

Average sequence ID (%) : 20.8 +/- 19.5
Average RMSD (Å) : 0.389 +/- 0.104

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XpXXXGX
(φψ)-conformation: bbaaaep
Pattern: x[cdgnst]xxx[DGKS]x
Conservation:-0.5170.260-0.344-0.486-0.5802.172-0.505
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aor_A_2961aor   A300306RLPTVGEEETTTEEbbaaaex
1csh_*_561csh   -5864LDPDEGIEETTTEEbxaaaex
1dfx_*_1101dfx   -114120YCNLHGHEETTTEEbbaaaex
1dqi_A_1031dqi   A110116YCNIHGLEETTTEEbxaaaex
1e1a_A_841e1a   A8894ADMRLGLEETTTEExbaaaeb
1ekg_A_1531ekg   A157163SSPSSGPEETTTEEbxaaaew
1ekm_A_2641ekm   A270276FNYREGIEETTTEEbbaaaex
1flt_X_1841flt   X186192WDSRKGFEETTTEEbbaaaex
1g0u_1_1721g0u   1178184IDKNTGLEETTTEEbbaaaeb
1g0u_2_971g0u   2104110YDDKNKGEETTTEEbbaaaex
1g0u_A_1341g0u   A141147HDEFNGFEETTTEEbbaaaex
1g0u_B_1341g0u   B141147YDDRYGYEETTTEEbbaaaex
1g0u_D_1341g0u   D141147HDADDGYEETTTEEbbaaaex
1g0u_D_2101g0u   D215221ITKQDGFEETTTEEbbaaaex
1g0u_K_981g0u   K104110YTRKEGPEETTTEEbbaaaew
1g3k_A_1031g3k   A106112ITGIGDVEETTTEEbbaaaex
1g8k_A_6471g8k   A648654WDESKGLEETTTEEbbaaaex
1h5w_A_621h5w   A6773KDPVISYEETTTEExxaaaep
1inl_A_471inl   A5258ENPDLGVEETTTEEbbaaaex
1ivw_A_2431ivw   A249255FDVREGVEETTTEEbbaaaex
1izn_B_1641izn   B180186NKTGSGTEEGGGEEbbaaaeb
1j09_A_1551j09   A159165KDELRGVEETTTEEbbaaaex
1jk4_A_261jk4   A2834CGDELGCEETTTEEbbaaaeb
1ksi_A_2431ksi   A249255FDVRAGIEETTTEEbbaaaex
1lbv_A_621lbv   A6571VTEESGVEETTTEEbbaaaex
1m15_A_2611m15   A261267HDDRFGFEETTTEEbbaaaex
1m6i_A_4401m6i   A443449YDIKLGREETTTEEbxaaaep
1m72_A_2241m72   A224230RNTTRGSEETTTEEbbaaaex
1n9e_A_3471n9e   A353359WSRDTGIEETTTEEbbaaaex
1nqe_A_3511nqe   A361367DNSQFGREETTTEEbbaaaex
1nzj_A_1411nzj   A143149TDQLRGIEETTTEExbaaaex
1nzo_A_2091nzo   A216222HTDKAGYEETTTEEbbaaaex
1oac_A_3281oac   A334340MNSRVGPEETTTEEbbaaaew
1ogs_A_4681ogs   A473479KDPAVGFEETTTEEbbaaaeb
1on2_A_521on2   A5460YEKYRGLEETTTEExbaaaex
1ooy_A_4351ooy   A439445VDRKKGLEETTTEEbbaaaex
1pii_*_571pii   -5763ASPSKGVEETTTEEbbaaaex
1pyo_B_2311pyo   B231237RNTKRGSEETTTEEbxaaaex
1q9i_A_2891q9i   A295301KGMYKGYEETTTEEbxaaaex
1qh4_A_2731qh4   A273279WNPHLGYEETTTEEbbaaaex
1qtn_B_4131qtn   B413419RNPAEGTEETTTEEbxaaaex
1qxo_A_2761qxo   A278284WSKEDGYEETTTEEbbaaaex
1rwr_A_551rwr   A5662VSRIGGAEETTTEEbxaaaex
1uir_A_341uir   A3945ESKGFGKEETTTEExbaaaex
1ukf_A_2221ukf   A226232FDPNLGEEETTTEEbbaaaeb
1vdw_A_641vdw   A6672VSEEIGREETTTEEbbaaaeb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aor_A_2961aor   A     FS4IRON/SULFUR CLUSTER G - 296
1aor_A_2961aor   A     NAWSODIUM ION, 3 WATERS COORDINATED G - 296
1aor_A_2961aor   A     FEFE (III) ION G - 296
1aor_A_2961aor   A     NAWSODIUM ION, 3 WATERS COORDINATED R - 297
1aor_A_2961aor   A     FEFE (III) ION T - 303
1aor_A_2961aor   A     NAWSODIUM ION, 3 WATERS COORDINATED E - 308
1csh_*_561csh   *     OAAOXALOACETATE ION L - 58
1dfx_*_1101dfx   *     FEFE (III) ION C - 115
1dfx_*_1101dfx   *     FEFE (III) ION N - 116
1dfx_*_1101dfx   *     FEFE (III) ION L - 117
1dfx_*_1101dfx   *     FEFE (III) ION H - 118
1dqi_A_1031dqi   A     FEFE (III) ION C - 111
1dqi_A_1031dqi   A     FEFE (III) ION N - 112
1dqi_A_1031dqi   A     FEFE (III) ION I - 113
1dqi_A_1031dqi   A     FEFE (III) ION H - 114
1m72_A_2241m72   A     ASKDEHYDROXYMETHYLASPARTIC ACID R - 224
1m72_A_2241m72   A     ASKDEHYDROXYMETHYLASPARTIC ACID S - 230
1nqe_A_3511nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE F - 353
1nqe_A_3511nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE E - 354
1nqe_A_3511nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE G - 355
1nqe_A_3511nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE A - 356
1nqe_A_3511nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE A - 357
1nqe_A_3511nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE R - 358
1nqe_A_3511nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE S - 359
1nqe_A_3511nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE R - 367
1nqe_A_3511nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE H - 368
1nqe_A_3511nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE G - 369
1nqe_A_3511nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE T - 370
1nqe_A_3511nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE W - 371
1nqe_A_3511nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE Q - 372
1nqe_A_3511nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE T - 373
1nqe_A_3511nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE S - 374
1nqe_A_3511nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE F - 379
1nqe_A_3511nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE I - 380
1pii_*_571pii   *     PO4PHOSPHATE ION K - 61
1q9i_A_2891q9i   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 298
1qtn_B_4131qtn   B     ASAASPARTIC ALDEHYDE R - 413
1qtn_B_4131qtn   B     ASAASPARTIC ALDEHYDE T - 419
1qxo_A_2761qxo   A     MSESELENOMETHIONINE I - 276
1qxo_A_2761qxo   A     MSESELENOMETHIONINE L - 277
1qxo_A_2761qxo   A     EGLETHYLENE GLYCOL D - 282
1qxo_A_2761qxo   A     EGLETHYLENE GLYCOL G - 283
1qxo_A_2761qxo   A     EGLETHYLENE GLYCOL Y - 284
1qxo_A_2761qxo   A     EGLETHYLENE GLYCOL T - 285
1qxo_A_2761qxo   A     EGLETHYLENE GLYCOL R - 286
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ogs_A_4681ogs   A AC8SO4 BINDING SITE FOR CHAIN AK - 473

Clusters included in this Subclass
CLUSTER: HA.4.10