Information on SUBCLASS 6.2.1 |
Subclass Accession number: 6428
Subclass: 6.2.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 22 Average sequence ID (%) : 15.3 +/- 17.7 Average RMSD (Å) : 0.668 +/- 0.380 Consensus geometry
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Consensus Sequence: | XXpXXpXXXX |
(φψ)-conformation: | bbpaaalpbb |
Pattern: | x | [acdstv] | x | [adegns] | x | x | [cdhnst] | [egnqrs] | x | x | x | x | x |
Conservation: | -0.797 | -0.048 | -0.108 | 0.831 | -0.412 | -1.188 | 2.477 | 1.105 | -0.001 | -1.189 | -0.012 | -0.116 | -0.543 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a06_*_34 | 1a06 | - | 36 | 48 | LAEDKRTQKLVAI | EEEETTT--EEEE | xbbxaaavxxbbb |
1cm8_A_41 | 1cm8 | A | 43 | 55 | SAVDGRTGAKVAI | EEEETTT--EEEE | bbbxaaagxxbbb |
1dp4_A_376 | 1dp4 | A | 379 | 391 | WDMDPETGAFRVV | EEE-TTT--EEEE | bbxxaaavxbbxa |
1h8d_H_198 | 1h8d | H | 200 | 212 | VMKSPFNNRWYQM | EEE-TTT--EEEE | bbbpaaalbxbxa |
1inp_*_196 | 1inp | - | 206 | 218 | VSQDLHTRRWKGQ | EEE-TTT--EEEE | abbxaaaUxxbbb |
1ivw_A_342 | 1ivw | A | 354 | 366 | KHSDLWSGINYTR | EEE-TTT--EEEE | bbbxaaavxbbbb |
1jj2_Z_16 | 1jj2 | Z | 16 | 28 | HTKCRRCGEKSYH | EEE-TTT-SEEEE | xbpxaaavxxaxx |
1jks_A_25 | 1jks | A | 29 | 41 | KCREKSTGLQYAA | EEEETTT--EEEE | xbbxaaavxxbbx |
1jou_B_198 | 1jou | B | 200 | 212 | VMKSPFNNRWYQM | EEE-TTTS-EEEE | bbbxaaavbxbxa |
1jwi_B_97 | 1jwi | B | 99 | 111 | FVAESFHNKWIQW | EEEETTT--EEEE | bbbxaaavxbbxb |
1khi_A_51 | 1khi | A | 58 | 70 | ISTSAATGQHRYL | EEE-TTT--EEEE | bbbxaaavxxbbb |
1kob_A_65 | 1kob | A | 69 | 81 | RCVEKATGRVFVA | EEEETTT--EEEE | xbbxaaavxxbbb |
1ky8_A_33 | 1ky8 | A | 35 | 47 | EVKSPIDLATIAK | EEE-TTT--EEEE | xbbxaaavxxabb |
1mda_H_94 | 1mda | H | 99 | 111 | EVFDPVTFLPIAD | EEE-TTT--EEEE | bbbxaaavxxabb |
1nvr_A_21 | 1nvr | A | 25 | 37 | LAVNRVTEEAVAV | EEEETTT--EEEE | xbbxaaavxbbxb |
1o6l_A_164 | 1o6l | A | 168 | 180 | LVREKATGRYYAM | EEEETTT--EEEE | xbbxaaavxxbbb |
1p5t_A_35 | 1p5t | A | 39 | 51 | LTLGAQSQILEPL | EEE-TTT-SEEEE | bbxxaaalbxbwa |
1pgs_*_62 | 1pgs | - | 66 | 78 | YVKNKTTGEWYEI | EEE-TTT--EEEE | bbxxaaavxxbxa |
1q41_A_70 | 1q41 | A | 72 | 84 | QAKLCDSGELVAI | EEEETTT--EEEE | bbbxaaavxxbbb |
1rdq_E_56 | 1rdq | E | 59 | 71 | LVKHKESGNHYAM | EEEETTT--EEEE | xbbxaaavxxbbx |
1ri6_A_61 | 1ri6 | A | 65 | 77 | YRIAPDDGALTFA | EEE-TTT--EEEE | bxbxaaavpbbpa |
1uu3_A_95 | 1uu3 | A | 98 | 110 | LARELATSREYAI | EEEETTT--EEEE | xbbxaaavxxbxb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1o6l_A_164 | 1o6l | A | AC1ANP BINDING SITE FOR CHAIN A | A - 179 |
1o6l_A_164 | 1o6l | A | AC1ANP BINDING SITE FOR CHAIN A | K - 181 |
1uu3_A_95 | 1uu3 | A | AC1LY4 BINDING SITE FOR CHAIN A | A - 109 |
1uu3_A_95 | 1uu3 | A | AC1LY4 BINDING SITE FOR CHAIN A | K - 111 |
Clusters included in this Subclass |
CLUSTER: HA.6.20 |
CLUSTER: HA.7.70 |