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Information on SUBCLASS 4.1.1
Subclass Accession number: 6750
Subclass: 4.1.1 PSSM
Type: AR beta-beta link
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 117

Average sequence ID (%) : 16.0 +/- 17.6
Average RMSD (Å) : 0.476 +/- 0.218

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 45-90
Consensus Sequence: XhXXXXXh
(φψ)-conformation: bbpplpbb
Pattern: xx[acfgilmtv][adegknqrst]x[adgnrs]xx[aiklmtv]
Conservation:-1.000-0.8221.633-0.456-0.4270.051-0.703-0.7581.482
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bhe_*_571bhe   -5765LSLPSGVSLEE--TT-EEbbxxxvbbb
1bhe_*_641bhe   -6573LLIDKGVTLEEE-TT-EEbbbxpvbbx
1bu7_A_3451bu7   A345353YPLEKGDELEEE-TT-EEbwbxpgxxb
1cb8_A_5021cb8   A502510GKTGRGKITEEE-TT-EEebxxxvbbb
1cgt_*_4791cgt   -479487FTLAAGATAEEE-TT-EEbbxxpvxbb
1chd_*_2241chd   -226234YIAPGDKHMEE--TTSEEbbpxxvbxb
1ciu_*_4801ciu   -480488FTLSAGEVAEEE-TT-EEbbxxpvxbb
1cpt_*_3301cpt   -330338QNIKRGDRIEEE-TT-EEbbxxpvxxb
1czf_A_981czf   A99107VTGASGHLIEEE-TT-EEbbbxpvxbb
1d3c_A_4801d3c   A480488FTLAAGGTAEEE-TT-EEbxxppvxbb
1e5d_A_1211e5d   A122130QVVKHGETLEEE-TT-EEbxbbpvxbb
1e9y_B_1191e9y   B120128ALAGEGLIVEEE-TT-EEbbxapvbbb
1f3z_*_1121f3z   -112119.RVKVGDTV.EE-TT-EE.xbbpgxpa
1fy2_A_1861fy2   A188196IGLPEGNWIEE--TT-EEbxxxpvbbb
1g6g_A_1221g6g   A122130QLLSQGDEIEE--TT-EEbxxbpvxbb
1gdo_A_2021gdo   A204212IFLEEGDIAEE--TT-EEbxxxpvxbb
1gpr_*_1051gpr   -105112.RVEPGQKL.EE-TT-EE.xbbpvxxa
1gtt_A_1821gtt   A182189.EIQPGDRV.EE-TT-EE.xbbpvxbb
1gyc_A_3711gyc   A372380YPLPAHSTIEEE-TT-EEbxbxxlbxb
1h2k_A_2701h2k   A271279LYIPMYWWHEEE-TT-EEbxbxpvxxb
1h5z_A_3371h5z   A337345HRIHEGDLVEEE-TT-EEbxbbpgxxb
1hg8_A_961hg8   A97105ITGASGHVIEEE-TT-EEbbbxpvxbb
1hn0_A_8091hn0   A811819TTLQQGDWLEEE-TT-EEbbbbpvxbb
1hv9_A_2911hv9   A291298.KIGTGCVI.EE-TT-EE.bbxpvxbb
1hv9_A_3021hv9   A302309.VIGDDCEI.EE-TT-EE.bbxplxbx
1hv9_A_3081hv9   A308315.EISPYTVV.EE-SS-EE.bxxplbbb
1hv9_A_3191hv9   A319326.NLAAACTI.EE-TT-EE.bbxxvxbb
1hv9_A_3301hv9   A330338ARLRPGAELEEE-TT-EEbbbbpvxbb
1hv9_A_3951hv9   A395403TIIGDDVFVEEE-TT-EEbbbxxlxbx
1hv9_A_4021hv9   A402409.FVGSDTQL.EE-TT-EE.bxxpvxbb
1hv9_A_4131hv9   A413421VTVGKGATIEEE-TT-EEbbbxpvxbb
1hv9_A_4201hv9   A420427.TIAAGTTV.EE-TT-EE.bbppvxbx
1idk_*_1041idk   -104112ITVTSNKSLEEE-SSEEExxbxxlbbb
1idk_*_1261idk   -126134LRIVSGAENEEE-TT-EEbbxxpgxbl
1io7_A_2701io7   A270278QTIEEGEYVEEE-TT-EEbbxxpvxxb
1itw_A_2071itw   A214222TSVQAGEIIEEE-TT-EEbxbbxvxbb
1izo_A_3061izo   A306314CEFKKGTSVEEE-TT-EEbbxbpvxxb
1jfb_A_3031jfb   A303311KLVRANEGIEEE-TT-EEbbxxpvxxb
1jip_A_3041jip   A304312VAIPQYSTVEEE-TT-EEbxxpxvxxb
1kgq_A_1101kgq   A110117.TVRQGAFI.EEBTT-EE.bbxxvbbb
1kgq_A_1161kgq   A116123.FIARNTVL.EE-TT-EE.bbxpvbbb
1kgq_A_1261kgq   A126134SYVNIGAYVEEE-TT-EEbbbxpvxbb
1kgq_A_1331kgq   A133140.YVDEGTMV.EE-TT-EE.bbxpvxbb
1kgq_A_1441kgq   A144152ATVGSCAQIEEE-TT-EExbbppvxbb
1kgq_A_1511kgq   A151158.QIGKNVHL.EE-TT-EE.bbxxlbbx
1kgq_A_1571kgq   A157164.HLSGGVGI.EE-TT-EE.bxxxvxbb
1kgq_A_1771kgq   A177184.IIEDNCFI.EE-TT-EE.bbxplxbb
1kgq_A_1831kgq   A183190.FIGARSEV.EE-TT-EE.bbxplxbb
1kgq_A_1951kgq   A195202.IVEEGSVI.EE-TT-EE.bbxpvxbb
1kgq_A_2011kgq   A201208.VISMGVYL.EE-TT-EE.bbxxlbbb
1krr_A_1031krr   A103110.LIAPNVTL.EE-SS-EE.bbxxlbbb
1krr_A_1391krr   A139146.WIGSHVVI.EE-TT-EE.bbxxlxbb
1krr_A_1511krr   A151158.TIGDNSVI.EE-TT-EE.bbxpUxbb
1krr_A_1571krr   A157164.VIGAGSIV.EE-TT-EE.bbxpvxbx
1krr_A_761krr   A7684IHIGRNFYAEEE-SS-EEbbbxblxbb
1krr_A_831krr   A8390.YANFNLTI.EE-S-EEE.bbxplxbb
1krr_A_961krr   A96104VTIGDNVLIEEE-SS-EEbbbxbvxbb
1l6p_A_281l6p   A3341WQIKDGYYLEEE-TTEEEbxbppvbbx
1lfk_A_3001lfk   A300308QEIKKGDSVEEE-TT-EEbxxbpvxbb
1lml_*_5331lml   -533541TNCTPGLRVEE--TT-EEbpbxpgxbb
1lxa_*_1161lxa   -116123.LLMINAHI.EE-TT-EE.bbxpvxbb
1lxa_*_1221lxa   -122129.HIAHDCTV.EE-TT-EE.bbxpvxbb
1lxa_*_1281lxa   -128135.TVGNRCIL.EE-SS-EE.bbFblbbb
1lxa_*_131lxa   -1320.IVEEGASI.EE-TT-EE.bbxxgxbb
1lxa_*_1341lxa   -134141.ILANNATL.EE-TT-EE.bbxpvxbb
1lxa_*_1401lxa   -140147.TLAGHVSV.EE-TT-EE.bbxxvxbb
1lxa_*_1461lxa   -146153.SVDDFAII.EE-TT-EE.bbxpvxbb
1lxa_*_1521lxa   -152159.IIGGMTAV.EE-TT-EE.bbpxvbbb
1lxa_*_1581lxa   -158165.AVHQFCII.EE-TT-EE.bbxpvxbb
1lxa_*_1641lxa   -164171.IIGAHVMV.EE-TT-EE.bbpxvxbb
1lxa_*_191lxa   -1926.SIGANAHI.EE-TT-EE.bbxplxbb
1lxa_*_251lxa   -2532.HIGPFCIV.EE-TT-EE.bbxplbbb
1lxa_*_371lxa   -3744.EIGEGTVL.EE-TT-EE.bbxplxbb
1lxa_*_531lxa   -5462TKIGRDNEIEEE-SS-EEbbbxblxbb
1lxa_*_611lxa   -6168.EIYQFASI.EE-TT-EE.bbxpvxbb
1lxa_*_831lxa   -8492VEIGDRNRIEEE-SS-EEbbbxbvxbb
1lxa_*_911lxa   -9198.RIRESVTI.EE-TT-EE.bbxpUxbb
1mr7_A_1141mr7   A114122TIIGNDVWIEEE-SS-EEbbbxxlbbx
1mr7_A_1211mr7   A121128.WIGKDVVI.EE-TT-EE.bxxpvxbb
1mr7_A_1271mr7   A127134.VIMPGVKI.EE-TT-EE.bbxxvxbb
1mr7_A_1331mr7   A133140.KIGDGAIV.EE-TT-EE.bbxpvxbb
1mr7_A_1391mr7   A139146.IVAANSVV.EE-TT-EE.bbppvxbx
1mr7_A_611mr7   A6169LKIGKFCSIEEE-SS-EEbbbxxlxbb
1mr7_A_681mr7   A6875.SIGPGVTI.EE-TT-EE.bbxxvpbb
1n40_A_2971n40   A297305VLVRKGELVEEE-TT-EEbxxxpvxxb
1nhc_A_1031nhc   A104112VTMADGAVIEEE-TT-EEbbbxpvxbb
1nr6_A_3761nr6   A376384YFIPKGTDIEEE-TT-EEbbbxpvxxb
1ocx_A_1011ocx   A101108.MLAPGVHI.EE-TT-EE.bbxxvxbb
1ocx_A_1301ocx   A130138VTIGNNVWIEEE-TT-EEbbbxxvxbb
1ocx_A_1371ocx   A137144.WIGGRAVI.EE-TT-EE.bbxpvxbb
1ocx_A_1431ocx   A143150.VINPGVTI.EE-TT-EE.bbxpvxbb
1ocx_A_1491ocx   A149156.TIGDNVVV.EE-TT-EE.bbxxvxbb
1ocx_A_1551ocx   A155162.VVASGAVV.EE-TT-EE.bbxpvxbx
1ocx_A_801ocx   A8088FFANFDCVMEEE-SSEEExbbxpvxbb
1ocx_A_941ocx   A94102IRIGDNCMLEEE-TT-EEbbbxxlxbb
1ogo_X_2671ogo   X268276VYLAPGAYVEEE-TTEEEbbbxpvxbb
1onw_A_511onw   A5260VVDLSGQILEEE-TT-EExbxapvbbb
1pam_A_4801pam   A480488FTLAPGGTAEEE-TT-EEbbxppvxbb
1po5_A_3801po5   A380388YVIPKNTEVEEE-TT-EExbbppvxxb
1poc_*_401poc   -4047.VMSAGESK.EE-TT-EE.bbxpvxbb
1q5d_A_3181q5d   A318326ASIKKGEMVEEE-TT-EEbxxxpvxxb
1qh5_A_871qh5   A8795HKITHLSTLEE--TT-EEbxbbpvxbb
1qho_A_4801qho   A480488FTLAPGAVSEEE-TT-EEbbxxpvxbb
1qmq_A_3101qmq   A310318VQLKKGDQIEEE-TT-EEbxxbpvxxb
1qre_A_1071qre   A107115VYIGNNVSLEEE-TT-EEbbbxxlbbb
1qre_A_1491qre   A149156.VLEPRSAA.EE-TT-EE.bbxpvxbb
1qre_A_1601qre   A160167.TIPDGRYI.EE-TTBEE.bxppvbbb
1qre_A_1661qre   A166173.YIPAGMVV.EE-TT-EE.bbppvxbx
1qre_A_441qre   A4452VTIGANVMVEEE-TT-EEbbbxxvxbb
1qre_A_511qre   A5158.MVSPMASI.EE-TT-EE.bbxpvxbb
1qre_A_661qre   A6674IFVGDRSNVEEE-TT-EEbbbxxvxbb
1qre_A_731qre   A7380.NVQDGVVL.EE-TT-EE.bbxxvxbb
1qxr_A_1271qxr   A128136VYVPPYWAHEEE-TT-EEbxxxpvxxb
1sft_A_2531sft   A255263KKLQPGEKVEEE-TT-EEbxbxxgxxb
1sml_A_1371sml   A137145RIVMDGEVIEE--TT-EEbxbbpvxbb
1ued_A_3091ued   A309317QLIKAGDYVEEE-TT-EEbbxxpgxbb
2gpr_*_1052gpr   -105112.EVNAGDKL.EE-TT-EE.xbbpvxxa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bu7_A_3451bu7   A     EDO1,2-ETHANEDIOL G - 350
1cpt_*_3301cpt   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 340
1gyc_A_3711gyc   A     NAGN-ACETYL-D-GLUCOSAMINE E - 381
1gyc_A_3711gyc   A     NAGN-ACETYL-D-GLUCOSAMINE T - 383
1gyc_A_3711gyc   A     NAGN-ACETYL-D-GLUCOSAMINE P - 385
1h2k_A_2701h2k   A     FE2FE (II) ION I - 273
1h2k_A_2701h2k   A     OGAN-OXALYOLGLYCINE I - 273
1h2k_A_2701h2k   A     FE2FE (II) ION H - 279
1h2k_A_2701h2k   A     OGAN-OXALYOLGLYCINE H - 279
1h2k_A_2701h2k   A     FE2FE (II) ION I - 281
1h2k_A_2701h2k   A     OGAN-OXALYOLGLYCINE I - 281
1h2k_A_2701h2k   A     OGAN-OXALYOLGLYCINE E - 282
1hg8_A_961hg8   A     NAGN-ACETYL-D-GLUCOSAMINE T - 96
1hv9_A_3951hv9   A     COCOBALT (II) ION F - 402
1hv9_A_3951hv9   A     COACOENZYME A F - 402
1hv9_A_3951hv9   A     COCOBALT (II) ION V - 403
1hv9_A_3951hv9   A     COACOENZYME A V - 403
1hv9_A_4021hv9   A     COCOBALT (II) ION G - 404
1hv9_A_4021hv9   A     COACOENZYME A G - 404
1hv9_A_4021hv9   A     COCOBALT (II) ION S - 405
1hv9_A_4021hv9   A     COACOENZYME A S - 405
1hv9_A_4021hv9   A     COCOBALT (II) ION D - 406
1hv9_A_4021hv9   A     COCOBALT (II) ION Q - 408
1hv9_A_4131hv9   A     COCOBALT (II) ION T - 420
1hv9_A_4131hv9   A     COACOENZYME A T - 420
1hv9_A_4131hv9   A     COCOBALT (II) ION I - 421
1hv9_A_4131hv9   A     COACOENZYME A I - 421
1hv9_A_4201hv9   A     COCOBALT (II) ION A - 422
1hv9_A_4201hv9   A     COACOENZYME A A - 422
1hv9_A_4201hv9   A     COCOBALT (II) ION A - 423
1hv9_A_4201hv9   A     COACOENZYME A A - 423
1hv9_A_4201hv9   A     COCOBALT (II) ION G - 424
1hv9_A_4201hv9   A     COACOENZYME A G - 424
1kgq_A_1161kgq   A     NPI2-AMINOPIMELIC ACID V - 122
1kgq_A_1331kgq   A     NPI2-AMINOPIMELIC ACID M - 139
1kgq_A_1511kgq   A     NPI2-AMINOPIMELIC ACID H - 157
1kgq_A_1511kgq   A     SCOSUCCINAMIDE-COA H - 157
1kgq_A_1571kgq   A     SCOSUCCINAMIDE-COA S - 159
1kgq_A_1571kgq   A     SCOSUCCINAMIDE-COA G - 160
1kgq_A_1571kgq   A     SCOSUCCINAMIDE-COA G - 161
1kgq_A_1771kgq   A     SCOSUCCINAMIDE-COA F - 183
1kgq_A_1771kgq   A     SCOSUCCINAMIDE-COA I - 184
1kgq_A_1831kgq   A     SCOSUCCINAMIDE-COA G - 185
1kgq_A_1831kgq   A     SCOSUCCINAMIDE-COA A - 186
1kgq_A_1831kgq   A     SCOSUCCINAMIDE-COA R - 187
1kgq_A_1951kgq   A     SCOSUCCINAMIDE-COA V - 201
1kgq_A_1951kgq   A     SCOSUCCINAMIDE-COA I - 202
1kgq_A_2011kgq   A     SCOSUCCINAMIDE-COA S - 203
1kgq_A_2011kgq   A     SCOSUCCINAMIDE-COA M - 204
1krr_A_761krr   A     ACOACETYL COENZYME *A Y - 83
1krr_A_761krr   A     ACOACETYL COENZYME *A A - 84
1krr_A_831krr   A     ACOACETYL COENZYME *A N - 85
1krr_A_831krr   A     ACOACETYL COENZYME *A F - 86
1krr_A_831krr   A     ACOACETYL COENZYME *A V - 91
1krr_A_1031krr   A     ACOACETYL COENZYME *A I - 104
1krr_A_1031krr   A     ACOACETYL COENZYME *A A - 105
1krr_A_1031krr   A     ACOACETYL COENZYME *A P - 106
1krr_A_1031krr   A     ACOACETYL COENZYME *A S - 111
1krr_A_1391krr   A     ACOACETYL COENZYME *A W - 139
1krr_A_1391krr   A     ACOACETYL COENZYME *A I - 140
1krr_A_1391krr   A     ACOACETYL COENZYME *A G - 141
1krr_A_1391krr   A     ACOACETYL COENZYME *A S - 142
1krr_A_1391krr   A     ACOACETYL COENZYME *A H - 143
1krr_A_1391krr   A     ACOACETYL COENZYME *A V - 145
1krr_A_1511krr   A     ACOACETYL COENZYME *A V - 157
1krr_A_1511krr   A     ACOACETYL COENZYME *A I - 158
1krr_A_1571krr   A     ACOACETYL COENZYME *A G - 159
1krr_A_1571krr   A     ACOACETYL COENZYME *A A - 160
1krr_A_1571krr   A     ACOACETYL COENZYME *A G - 161
1krr_A_1571krr   A     ACOACETYL COENZYME *A S - 162
1krr_A_1571krr   A     ACOACETYL COENZYME *A I - 163
1nr6_A_3761nr6   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 386
1ocx_A_801ocx   A     PBMTRIMETHYL LEAD ION F - 81
1ocx_A_801ocx   A     PBMTRIMETHYL LEAD ION N - 83
1ocx_A_801ocx   A     PBMTRIMETHYL LEAD ION L - 89
1ocx_A_1011ocx   A     PBMTRIMETHYL LEAD ION M - 101
1ocx_A_1011ocx   A     PBMTRIMETHYL LEAD ION L - 102
1ocx_A_1011ocx   A     PBMTRIMETHYL LEAD ION A - 103
1ocx_A_1011ocx   A     PBMTRIMETHYL LEAD ION P - 104
1ocx_A_1301ocx   A     PBMTRIMETHYL LEAD ION W - 137
1po5_A_3801po5   A     HEMPROTOPORPHYRIN IX CONTAINING FE P - 390
1poc_*_401poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE V - 40
1q5d_A_3181q5d   A     EPB7,11-DIHYDROXY-8,8,10,12,16-PENTAMETHYL-3-[1-METHYL-2-(2-METHYL-THIAZOL-4-YL)VINYL]-4,17-DIOXABICYCLO[14.1.0]HEPTADECANE-5,9-DIONE F - 327
1qre_A_511qre   A     BCTBICARBONATE ION R - 59
1qre_A_511qre   A     OCNCOBALT ION, 2 WATERS COORDINATED R - 59
1qre_A_731qre   A     BCTBICARBONATE ION H - 81
1qre_A_731qre   A     OCNCOBALT ION, 2 WATERS COORDINATED H - 81
1qre_A_731qre   A     BCTBICARBONATE ION A - 82
1qre_A_731qre   A     OCNCOBALT ION, 2 WATERS COORDINATED A - 82
1qxr_A_1271qxr   A     NINICKEL (II) ION H - 136
1qxr_A_1271qxr   A     PA55-PHOSPHOARABINONIC ACID H - 136
1qxr_A_1271qxr   A     PA55-PHOSPHOARABINONIC ACID R - 137
1qxr_A_1271qxr   A     PA55-PHOSPHOARABINONIC ACID T - 138
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gyc_A_3711gyc   A NA6NAG BINDING SITE FOR CHAIN AT - 383
1h2k_A_2701h2k   A FE1FE BINDING SITE FOR CHAIN AH - 279
1h2k_A_2701h2k   A OGAOGA BINDING SITE FOR CHAIN AI - 281
1lml_*_5331lml   * CA3CARBOHYDRATE BINDING SITE.N - 534
1ocx_A_801ocx   A AC4PBM BINDING SITE FOR CHAIN BF - 81
1ocx_A_801ocx   A AC4PBM BINDING SITE FOR CHAIN BN - 83

Clusters included in this Subclass
CLUSTER: AR.3.0
CLUSTER: AR.4.0
CLUSTER: AR.5.0
CLUSTER: AR.6.9