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Information on SUBCLASS 4.2.1
Subclass Accession number: 6752
Subclass: 4.2.1 PSSM
Type: AR beta-beta link
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 21

Average sequence ID (%) : 8.7 +/- 13.2
Average RMSD (Å) : 0.810 +/- 0.318

Consensus geometry
d (Å): 13 delta (°): 0-45 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: hXXXXXXX
(φψ)-conformation: bbpabpbb
Pattern: x[fgiltv]xx[adpstv]xxxx
Conservation:-1.0001.336-1.078-0.3401.513-0.289-1.1820.308-0.268
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b0a_A_2261b0a   A226234IVIDVGINREEEE---EEbxbxaxbbx
1dun_*_191dun   -2028DLCVPYDIMEEE-SS-EExbbxabxbb
1dun_*_341dun   -3644IIPTDVKIQEEE---EEEbxxbaxbbb
1f7d_A_181f7d   A1927DLLAAKEIHEEE-SS-EExbbxabxbb
1ga6_A_1291ga6   A129137VINVSLGWCEEEE---EEbbxbabbbp
1hyo_A_2571hyo   A257265TTISPWVVPEEE-S-BEEbbbxaxxxx
1is8_A_1141is8   A114122DEDHDEMVIEEEE-S-EEbalxabpbb
1kig_H_1481kig   H148156GRLSSTLKMEEE-SS-EEbxpxabxbb
1lml_*_1011lml   -101108.VRDVNWGA.EE-SS-EE.bbxaxxbx
1lns_A_6011lns   A604612DLELPSMLTEEE-SS-EExxxxabxbb
1lwd_A_51lwd   A512.IKVAKPVV.EE-SS-EE.xxbabxbx
1m4i_A_1321m4i   A132139.LPWHGPTS.EE--S-EE.bxxaxxbb
1mq7_A_261mq7   A2836DLYSAEDVEEEE-SS-EExbbxabxbb
1nr6_A_3651nr6   A365372.HAVTRDVR.EE-SS-EE.bbxabpbb
1obd_A_301obd   A3341FVATDRISAEEE-S--EEbbxxaxbbb
1od2_A_18871od2   A18921900IGVETRTVEEEE--S-EEbbbxaxxxx
1p42_A_1301p42   A130137.FVVEEPII.EE--S-EE.xbxabwbb
1po5_A_3691po5   A369376.HTVTKDTQ.EE-SS-EE.bbxabpbx
1q5h_A_241q5h   A2634DLYSAYDYTEEE-SS-EExbbxabxbb
2pva_A_472pva   A4755VINNSYAFVEE--SS-EEbbxxabxbb
3cla_*_823cla   -8391LIVWDSVDPEEEES--EExbbxabbbw
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ga6_A_1291ga6   A     ACTACETATE ION V - 132
1ga6_A_1291ga6   A     ACTACETATE ION S - 133
1ga6_A_1291ga6   A     ACTACETATE ION L - 134
1ga6_A_1291ga6   A     ACTACETATE ION G - 135
1ga6_A_1291ga6   A     ACTACETATE ION W - 136
1hyo_A_2571hyo   A     MGMAGNESIUM ION T - 257
1hyo_A_2571hyo   A     MGMAGNESIUM ION T - 258
1is8_A_1141is8   A     ZNZINC ION C - 132
1nr6_A_3651nr6   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 365
1obd_A_301obd   A     ATPADENOSINE-5'-TRIPHOSPHATE L - 31
1obd_A_301obd   A     ATPADENOSINE-5'-TRIPHOSPHATE F - 33
1od2_A_18871od2   A     MSESELENOMETHIONINE L - 1889
1od2_A_18871od2   A     MSESELENOMETHIONINE G - 1890
1od2_A_18871od2   A     MSESELENOMETHIONINE V - 1891
1od2_A_18871od2   A     MSESELENOMETHIONINE I - 1892
1od2_A_18871od2   A     MSESELENOMETHIONINE G - 1893
1po5_A_3691po5   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 369
1q5h_A_241q5h   A     DUDDEOXYURIDINE-5'-DIPHOSPHATE D - 26
3cla_*_823cla   *     COCOBALT (II) ION D - 87
3cla_*_823cla   *     CLMCHLORAMPHENICOL Q - 92
3cla_*_823cla   *     CLMCHLORAMPHENICOL T - 94
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1obd_A_301obd   A AC2ATP BINDING SITE FOR CHAIN AL - 31
1obd_A_301obd   A AC2ATP BINDING SITE FOR CHAIN AF - 33

Clusters included in this Subclass
CLUSTER: AR.3.25
CLUSTER: AR.4.13
CLUSTER: AR.4.31
CLUSTER: AR.5.10