Information on SUBCLASS 4.2.1 |
Subclass Accession number: 6752
Subclass: 4.2.1 Type: AR beta-beta link DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 21 Average sequence ID (%) : 8.7 +/- 13.2 Average RMSD (Å) : 0.810 +/- 0.318 Consensus geometry
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Consensus Sequence: | hXXXXXXX |
(φψ)-conformation: | bbpabpbb |
Pattern: | x | [fgiltv] | x | x | [adpstv] | x | x | x | x |
Conservation: | -1.000 | 1.336 | -1.078 | -0.340 | 1.513 | -0.289 | -1.182 | 0.308 | -0.268 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1b0a_A_226 | 1b0a | A | 226 | 234 | IVIDVGINR | EEEE---EE | bxbxaxbbx |
1dun_*_19 | 1dun | - | 20 | 28 | DLCVPYDIM | EEE-SS-EE | xbbxabxbb |
1dun_*_34 | 1dun | - | 36 | 44 | IIPTDVKIQ | EEE---EEE | bxxbaxbbb |
1f7d_A_18 | 1f7d | A | 19 | 27 | DLLAAKEIH | EEE-SS-EE | xbbxabxbb |
1ga6_A_129 | 1ga6 | A | 129 | 137 | VINVSLGWC | EEEE---EE | bbxbabbbp |
1hyo_A_257 | 1hyo | A | 257 | 265 | TTISPWVVP | EEE-S-BEE | bbbxaxxxx |
1is8_A_114 | 1is8 | A | 114 | 122 | DEDHDEMVI | EEEE-S-EE | balxabpbb |
1kig_H_148 | 1kig | H | 148 | 156 | GRLSSTLKM | EEE-SS-EE | bxpxabxbb |
1lml_*_101 | 1lml | - | 101 | 108 | .VRDVNWGA | .EE-SS-EE | .bbxaxxbx |
1lns_A_601 | 1lns | A | 604 | 612 | DLELPSMLT | EEE-SS-EE | xxxxabxbb |
1lwd_A_5 | 1lwd | A | 5 | 12 | .IKVAKPVV | .EE-SS-EE | .xxbabxbx |
1m4i_A_132 | 1m4i | A | 132 | 139 | .LPWHGPTS | .EE--S-EE | .bxxaxxbb |
1mq7_A_26 | 1mq7 | A | 28 | 36 | DLYSAEDVE | EEE-SS-EE | xbbxabxbb |
1nr6_A_365 | 1nr6 | A | 365 | 372 | .HAVTRDVR | .EE-SS-EE | .bbxabpbb |
1obd_A_30 | 1obd | A | 33 | 41 | FVATDRISA | EEE-S--EE | bbxxaxbbb |
1od2_A_1887 | 1od2 | A | 1892 | 1900 | IGVETRTVE | EEE--S-EE | bbbxaxxxx |
1p42_A_130 | 1p42 | A | 130 | 137 | .FVVEEPII | .EE--S-EE | .xbxabwbb |
1po5_A_369 | 1po5 | A | 369 | 376 | .HTVTKDTQ | .EE-SS-EE | .bbxabpbx |
1q5h_A_24 | 1q5h | A | 26 | 34 | DLYSAYDYT | EEE-SS-EE | xbbxabxbb |
2pva_A_47 | 2pva | A | 47 | 55 | VINNSYAFV | EE--SS-EE | bbxxabxbb |
3cla_*_82 | 3cla | - | 83 | 91 | LIVWDSVDP | EEEES--EE | xbbxabbbw |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ga6_A_129 | 1ga6 | A | ACTACETATE ION | V - 132 |
1ga6_A_129 | 1ga6 | A | ACTACETATE ION | S - 133 |
1ga6_A_129 | 1ga6 | A | ACTACETATE ION | L - 134 |
1ga6_A_129 | 1ga6 | A | ACTACETATE ION | G - 135 |
1ga6_A_129 | 1ga6 | A | ACTACETATE ION | W - 136 |
1hyo_A_257 | 1hyo | A | MGMAGNESIUM ION | T - 257 |
1hyo_A_257 | 1hyo | A | MGMAGNESIUM ION | T - 258 |
1is8_A_114 | 1is8 | A | ZNZINC ION | C - 132 |
1nr6_A_365 | 1nr6 | A | HEMPROTOPORPHYRIN IX CONTAINING FE | H - 365 |
1obd_A_30 | 1obd | A | ATPADENOSINE-5'-TRIPHOSPHATE | L - 31 |
1obd_A_30 | 1obd | A | ATPADENOSINE-5'-TRIPHOSPHATE | F - 33 |
1od2_A_1887 | 1od2 | A | MSESELENOMETHIONINE | L - 1889 |
1od2_A_1887 | 1od2 | A | MSESELENOMETHIONINE | G - 1890 |
1od2_A_1887 | 1od2 | A | MSESELENOMETHIONINE | V - 1891 |
1od2_A_1887 | 1od2 | A | MSESELENOMETHIONINE | I - 1892 |
1od2_A_1887 | 1od2 | A | MSESELENOMETHIONINE | G - 1893 |
1po5_A_369 | 1po5 | A | HEMPROTOPORPHYRIN IX CONTAINING FE | H - 369 |
1q5h_A_24 | 1q5h | A | DUDDEOXYURIDINE-5'-DIPHOSPHATE | D - 26 |
3cla_*_82 | 3cla | * | COCOBALT (II) ION | D - 87 |
3cla_*_82 | 3cla | * | CLMCHLORAMPHENICOL | Q - 92 |
3cla_*_82 | 3cla | * | CLMCHLORAMPHENICOL | T - 94 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1obd_A_30 | 1obd | A | AC2ATP BINDING SITE FOR CHAIN A | L - 31 |
1obd_A_30 | 1obd | A | AC2ATP BINDING SITE FOR CHAIN A | F - 33 |
Clusters included in this Subclass |
CLUSTER: AR.3.25 |
CLUSTER: AR.4.13 |
CLUSTER: AR.4.31 |
CLUSTER: AR.5.10 |