Logo
Information on SUBCLASS 3.3.1
Subclass Accession number: 7840
Subclass: 3.3.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 27

Average sequence ID (%) : 15.6 +/- 17.5
Average RMSD (Å) : 0.467 +/- 0.141

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XXXGpph
(φψ)-conformation: bbagabb
Pattern: x[dhnstwy]x[egkq][dehknrsty][aeknqrst]xx
Conservation:-0.937-0.3180.0082.371-0.358-0.149-0.137-0.479
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a79_A_371a79   A3744NVEGNFLSEE-SS-EEbxaGabbb
1ao0_A_301ao0   A3542ATDGEKLTEE-SS-EEbbagabbx
1bqb_A_1151bqb   A116123AWIGDKMIEE-SSSEEbxagNbbb
1e5d_A_1291e5d   A130137LSLGKRTVEE-SS-EEbxaeaxbb
1eag_A_31eag   A815HNEQVTYAEE-SSSEExxagabbb
1f8d_A_1791f8d   A183190CHDGKTRMEE-SSSEEbxagabbb
1gyc_A_3301gyc   A331338NFNGTNFFEE-SS-EEbbagabxb
1gz7_A_151gz7   A1522LNAIVNEKEE-SSSEEbxaGabbb
1hcb_*_561hcb   -6067INVGHSFHEE-SS-EEbxaGabbb
1io7_A_141io7   A1522YYDGNIWQEE-SS-EEbbagabxb
1j0h_A_5191j0h   A524531KTDGDETVEE-SS-EEbbavabbb
1j2q_H_1731j2q   H177184KITEDEFYEE-SS-EEbbagabbb
1jd0_A_561jd0   A6067TNNGHSVKEE-SSSEEbxavabbb
1k32_A_2751k32   A279286NTDGRRILEESSS-EEbbavabbb
1keq_A_561keq   A6067WNTGYAFQEE-SSSEEbxavabbb
1kny_A_631kny   A6875WTTGEWKVEE-SS-EEbbagabbb
1kop_A_601kop   A6269ENNGHTIQEE-SS-EEbbavabbb
1kqf_A_7981kqf   A799806QWNGSKWTEE-SSSEEbxagNbxb
1llf_A_151llf   A1522LNAIINEAEE-SS-EEbxagabbb
1mkh_A_311mkh   A3542VDLGDEVREE-SS-EEbxagabbx
1mkh_A_841mkh   A8592ADDGERVAEE-SS-EExbavaxbb
1moo_A_561moo   A6067LNNGAAFNEE-SSSEEbxavabbb
1n7o_A_6641n7o   A671678FMLKDKIAEE-SS-EEbxaGabbx
1npc_*_1141npc   -115122FWNGSQMVEE-SSSEEbxavabxb
1ps9_A_91ps9   A916LDLGFTTLEE-SS-EEbxagabbx
2bat_*_1802bat   -183190CHDGKAWLEE-SSSEEbbagabxb
2znc_*_552znc   -6067KNNQHTVEEE-SSSEEbxavabxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1eag_A_31eag   A     PSSETHYLAMINOBENZYLMETHYLCARBONYL GROUP V - 12
1eag_A_31eag   A     PSSETHYLAMINOBENZYLMETHYLCARBONYL GROUP T - 13
1eag_A_31eag   A     CHA1-HYDROXY-2-AMINO-3-CYCLOHEXYLPROPANE T - 13
1gyc_A_3301gyc   A     IPAISOPROPYL ALCOHOL F - 332
1gyc_A_3301gyc   A     NAGN-ACETYL-D-GLUCOSAMINE N - 333
1gyc_A_3301gyc   A     NAGN-ACETYL-D-GLUCOSAMINE G - 334
1gyc_A_3301gyc   A     NAGN-ACETYL-D-GLUCOSAMINE T - 335
1gyc_A_3301gyc   A     IPAISOPROPYL ALCOHOL T - 335
1gyc_A_3301gyc   A     NAGN-ACETYL-D-GLUCOSAMINE N - 336
1gyc_A_3301gyc   A     IPAISOPROPYL ALCOHOL N - 336
1gyc_A_3301gyc   A     CUCOPPER (II) ION F - 337
1gyc_A_3301gyc   A     IPAISOPROPYL ALCOHOL F - 337
1gyc_A_3301gyc   A     NAGN-ACETYL-D-GLUCOSAMINE F - 338
1keq_A_561keq   A     ZN3ZINC ION, 1 WATER COORDINATED Y - 64
1keq_A_561keq   A     4MZ4-METHYLIMIDAZOLE Q - 67
1kny_A_631kny   A     KANKANAMYCIN A E - 67
1kny_A_631kny   A     KANKANAMYCIN A K - 74
1kny_A_631kny   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER E - 76
1kny_A_631kny   A     KANKANAMYCIN A E - 76
1moo_A_561moo   A     4MZ4-METHYLIMIDAZOLE L - 57
1moo_A_561moo   A     4MZ4-METHYLIMIDAZOLE N - 62
1moo_A_561moo   A     4MZ4-METHYLIMIDAZOLE G - 63
1moo_A_561moo   A     4MZ4-METHYLIMIDAZOLE A - 64
1moo_A_561moo   A     4MZ4-METHYLIMIDAZOLE N - 67
1moo_A_561moo   A     4MZ4-METHYLIMIDAZOLE V - 68
1moo_A_561moo   A     4MZ4-METHYLIMIDAZOLE E - 69
1moo_A_561moo   A     4MZ4-METHYLIMIDAZOLE F - 70
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gyc_A_3301gyc   A NA5NAG BINDING SITE FOR CHAIN AN - 333
1gyc_A_3301gyc   A NA5NAG BINDING SITE FOR CHAIN AT - 335
1gyc_A_3301gyc   A NA5NAG BINDING SITE FOR CHAIN AN - 336
1gyc_A_3301gyc   A NA5NAG BINDING SITE FOR CHAIN AF - 338

Clusters included in this Subclass
CLUSTER: HA.3.13