ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 1.3.3

Subclass Accession number: 8164
Subclass: 1.3.3

PSSM

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 14

Average sequence ID (%) : 8.8 +/- 12.8
Average RMSD (Å) : 0.607 +/- 0.138

Consensus geometry

d (Å): 9

delta (°): 0-45

theta (°): 0-45

rho (°): 180-225

Consensus Sequence:	XXXph
(φψ)-conformation:	aapbb

Pattern:	[adekqrs]	x	x	[AEGKQRST]	[aegknqs]	x	[ehkqrst]	[afilvw]
Conservation:	-0.057	-1.787	-1.137	1.261	0.736	0.419	0.434	0.130

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ak2_*_133	1ak2	-	138	145	RRITGRLI	HHHHT-EE	aaaaaxbb
1arb_*_63	1arb	-	64	71	STAASIVV	HHHHT-EE	aaaaaxbx
1b6a_*_297	1b6a	-	306	313	EVMESYEV	HHHHT-EE	aaaaaxbb
1c7s_A_29	1c7s	A	33	40	DQLSQLKL	HHHTT-EE	aaaaaxbx
1cqz_A_94	1cqz	A	94	101	QAMAARSI	HHHHT-EE	aaaaabbx
1ds1_A_242	1ds1	A	254	261	ALDEVTEA	HHHHT-EE	aaaaapbb
1e2k_A_306	1e2k	A	317	324	KRLRSMHV	HHHHT-EE	aaaaaxbx
1fui_A_421	1fui	A	426	433	ACLAATEW	HHHHT-EE	aaaaabbx
1g9g_A_432	1g9g	A	444	451	WINGEIKF	HHHTS-EE	aaaaaxbb
1i7d_A_123	1i7d	A	124	131	EKRQQVQR	HHHHT-EE	aaaaaxbb
1j36_A_110	1j36	A	125	132	SNFAKVKV	HHHHT-EE	aaaaaxbb
1jqo_A_158	1jqo	A	163	170	EALKNQTV	HHHHT-EE	aaaaabbb
1khb_A_450	1khb	A	455	462	FVGAAMRS	HHHHT-EE	aaaaapbb
1qht_A_48	1qht	A	49	56	EDVKKVTA	HHHTT-EE	aaaaaxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1khb_A_450	1khb	A	EDO1,2-ETHANEDIOL	W - 450
1khb_A_450	1khb	A	EDO1,2-ETHANEDIOL	Q - 451
1khb_A_450	1khb	A	EDO1,2-ETHANEDIOL	G - 453

Clusters included in this Subclass

CLUSTER: HE.1.26

CLUSTER: HE.2.35

CLUSTER: HE.3.145