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PDB code:

Information on SUBCLASS 3.2.2

Subclass Accession number: 8306 Subclass: 3.2.2 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates:

Number of loops: 38 Average sequence ID (%) : 13.3 +/- 15.7 Average RMSD (Å) : 0.842 +/- 0.247 Consensus geometry d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ako_*_15	1ako	-	19	31	EAIVEKHQPDVIG	HHHHHHH--SEEE	aaaaaaalxabbb
1bvu_A_79	1bvu	A	90	102	TWKTAVMDLPYGG	HHHHHHHT-S-EE	aaaaaaavxabbb
1bxn_A_313	1bxn	A	317	329	AKWLRLAGVDHMH	HHHHHHHT-SEEE	aaaaaaagxabbx
1ccw_B_226	1ccw	B	237	249	ALLAAEQGVKNIT	HHHHHHTT--EEE	aaaaaaagxabbb
1cdo_A_230	1cdo	A	230	242	FEKAKVFGATDFV	HHHHHHTT--EEE	aaaaaaagxabbb
1cjb_A_151	1cjb	A	157	169	CEYLKKFEIKTVA	HHHHGGG-BSEEE	aaaaaaalxabbb
1d3g_A_105	1d3g	A	105	117	VDGLYKMGFGFVE	HHHHHHHT-SEEE	aaaaaaagxabbb
1dbt_A_200	1dbt	A	200	212	PAIAREKGSSAIV	HHHHHHTT-SEEE	aaaaaaavxabbb
1doz_A_196	1doz	A	205	217	KLIAEGAGVSEYA	HHHHHHHT---EE	aaaaaaavxabbb
1dp4_A_64	1dp4	A	70	82	VDLKWEHSPAVFL	HHHHHHH--SEEE	aaaaaaalxabbb
1dxe_A_220	1dxe	A	223	235	ARRYLEWGATFVA	HHHHHHTT--EEE	aaaaaaagxabbx
1e3i_A_233	1e3i	A	233	245	FPKAKALGATDCL	HHHHHHTT-SEEE	aaaaaaagxabbb
1ffw_A_15	1ffw	A	22	34	RNLLKELGFNNVE	HHHHHHTT---EE	aaaaaaavbaxbb
1geh_A_298	1geh	A	302	314	AKLYRLIGIDQLH	HHHHHHHT-SEEE	aaaaaaaNxabbx
1gpj_A_29	1gpj	A	31	43	RDIVESFGLSGSV	HHHHHHHT-SEEE	aaaaaaalxabbb
1hp1_A_192	1hp1	A	201	213	QELQQTEKPDIII	HHHHHHT--SEEE	aaaaaaalxabbb
1ht0_A_229	1ht0	A	229	241	FAKAKELGATECI	HHHHHHHT-SEEE	aaaaaaagxabbb
1i39_A_78	1i39	A	87	99	AEIILRLKPEIAY	HHHHHHH--SEEE	aaaaaaalxabbb
1j93_A_58	1j93	A	66	78	LQPWKVFRPDGVI	HHHHHHH--SEEE	aaaaaaalxabbx
1k2y_X_224	1k2y	X	227	239	IAKVKAENADLGL	HHHHHHHT-SEEE	aaaaaaalxabbb
1k2y_X_308	1k2y	X	312	324	KKKMKETGALLAG	HHHHHHHT-SEEE	aaaaaaavxabbb
1k4g_A_137	1k4g	A	141	153	IEIQHLLGSDIVM	HHHHHHHT-SEEE	aaaaaaavpabxx
1k92_A_54	1k92	A	56	68	PRRAMEYGAENAR	HHHHHHHT-SEEE	aaaaaaagxabbb
1kae_A_146	1kae	A	146	158	ATPASIAGCKKVV	HHHHHHHT-SEEE	aaaaaaavpabbb
1kor_A_41	1kor	A	45	57	REKALRTGASKAI	HHHHHHHT-SEEE	aaaaaaagxabbb
1m3k_A_353	1m3k	A	362	374	LFEMKRRGARKGL	HHHHHHHT-SEEE	aaaaaaavxabbb
1meo_A_120	1meo	A	121	133	HEQALETGVTVTG	HHHHHHHT-SEEE	aaaaaaavxabbe
1mio_A_120	1mio	A	128	140	HEAYEMFHPAAIG	HHHHHHT--SEEE	bIaaaaalxabbb
1mu5_A_319	1mu5	A	324	336	LGLKKIFNPDFAA	HHHHHHH--SEEE	aaaaaaalxabbb
1n8k_A_229	1n8k	A	229	241	FAKAKEVGATECV	HHHHHHHT-SEEE	aaaaaaaNxabbb
1nth_A_271	1nth	A	283	295	INAVLMSSASWHL	HHHHHHS--SEEE	aaaaaaalxabbb
1ojx_A_158	1ojx	A	165	177	ARIALELGADAMK	HHHHHHHT-SEEE	aaaaaaagpabbb
1r3e_A_25	1r3e	A	30	42	DEVRKKLKTRKVG	HHHHHHTT-S-EE	aaaaaaalbaxbb
1req_A_343	1req	A	352	364	AMAATQGHTQSLH	HHHHHHTT-SEEE	aaaaaaavxabbb
1req_B_338	1req	B	347	359	TFSASVGGAESIT	HHHHHHHT-SEEE	aaaaaaavxabbb
1srr_A_36	1srr	A	40	52	LDIVTKERPDLVL	HHHHHHH--SEEE	aaaaaaalxabbb
1v39_*_150	1v39	-	161	173	NVMISILNPVASS	HHHHHHH--SEEE	aaaaaaalxabbb
2tps_A_95	2tps	A	95	107	VELALNLKADGIH	HHHHHHHT-SEEE	aaaaaaalpabbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1bxn_A_313	1bxn	A	PO4PHOSPHATE ION	H - 329
1cjb_A_151	1cjb	A	IRP(1S)-1(9-DEAZAHYPOXANTHIN-9YL)1,4-DIDEOXY-1,4-IMINO-D-RIBITOL-5-PHOSPHATE	K - 151
1cjb_A_151	1cjb	A	MGMAGNESIUM ION	T - 152
1cjb_A_151	1cjb	A	IRP(1S)-1(9-DEAZAHYPOXANTHIN-9YL)1,4-DIDEOXY-1,4-IMINO-D-RIBITOL-5-PHOSPHATE	T - 152
1cjb_A_151	1cjb	A	POPPYROPHOSPHATE 2-	T - 152
1cjb_A_151	1cjb	A	IRP(1S)-1(9-DEAZAHYPOXANTHIN-9YL)1,4-DIDEOXY-1,4-IMINO-D-RIBITOL-5-PHOSPHATE	L - 153
1cjb_A_151	1cjb	A	IRP(1S)-1(9-DEAZAHYPOXANTHIN-9YL)1,4-DIDEOXY-1,4-IMINO-D-RIBITOL-5-PHOSPHATE	K - 176
1d3g_A_105	1d3g	A	BRE2-BIPHENYL-4-YL-6-FLUORO-3-METHYL-QUINOLINE-4-CARBOXYLIC ACID	M - 111
1d3g_A_105	1d3g	A	FMNFLAVIN MONONUCLEOTIDE	E - 117
1d3g_A_105	1d3g	A	FMNFLAVIN MONONUCLEOTIDE	G - 119
1d3g_A_105	1d3g	A	FMNFLAVIN MONONUCLEOTIDE	S - 120
1d3g_A_105	1d3g	A	OROOROTIC ACID	S - 120
1dbt_A_200	1dbt	A	U5PURIDINE-5'-MONOPHOSPHATE	V - 212
1dbt_A_200	1dbt	A	U5PURIDINE-5'-MONOPHOSPHATE	V - 213
1doz_A_196	1doz	A	MO6MAGNESIUM ION, 6 WATERS COORDINATED	Q - 199
1doz_A_196	1doz	A	MO6MAGNESIUM ION, 6 WATERS COORDINATED	Q - 221
1dxe_A_220	1dxe	A	PO4PHOSPHATE ION	S - 238
1ffw_A_15	1ffw	A	PONIMIDO DIPHOSPHATE	S - 15
1ffw_A_15	1ffw	A	PONIMIDO DIPHOSPHATE	T - 16
1ffw_A_15	1ffw	A	PONIMIDO DIPHOSPHATE	R - 18
1gpj_A_29	1gpj	A	GMC(2R,3R,4S,5S)-4-AMINO-2-[6-(DIMETHYLAMINO)-9H-PURIN-9-YL]-5-(HYDROXYMETHYL)TETRAHYDRO-3-FURANOL	T - 47
1gpj_A_29	1gpj	A	GLUGLUTAMIC ACID	T - 47
1hp1_A_192	1hp1	A	ZNZINC ION	H - 217
1hp1_A_192	1hp1	A	CO3CARBONATE ION	H - 217
1k2y_X_308	1k2y	X	TLAL(+)-TARTARIC ACID	H - 308
1kae_A_146	1kae	A	MSESELENOMETHIONINE	A - 146
1kae_A_146	1kae	A	MSESELENOMETHIONINE	T - 147
1kae_A_146	1kae	A	MSESELENOMETHIONINE	P - 148
1kor_A_41	1kor	A	ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER	V - 41
1n8k_A_229	1n8k	A	MPD2-METHYL-2,4-PENTANEDIOL	T - 238
1n8k_A_229	1n8k	A	MPD2-METHYL-2,4-PENTANEDIOL	E - 239
1nth_A_271	1nth	A	BGX4-METHYL-PYRROLINE-5-CARBOXYLIC ACID	L - 295
1req_B_338	1req	B	GOLGLYCEROL	A - 350
1req_B_338	1req	B	GOLGLYCEROL	S - 351
1req_B_338	1req	B	GOLGLYCEROL	G - 353
1req_B_338	1req	B	GOLGLYCEROL	G - 354
1req_B_338	1req	B	GOLGLYCEROL	A - 355
1req_B_338	1req	B	GOLGLYCEROL	E - 356
1req_B_338	1req	B	GOLGLYCEROL	S - 357
1req_B_338	1req	B	GOLGLYCEROL	I - 358
1req_A_343	1req	A	DCADESULFO-COENZYME A	Q - 361
1req_A_343	1req	A	DCADESULFO-COENZYME A	S - 362
1req_A_343	1req	A	GOLGLYCEROL	H - 364
1srr_A_36	1srr	A	CACALCIUM ION	D - 54
1v39_*_150	1v39	*	SAHS-ADENOSYL-L-HOMOCYSTEINE	N - 156
1v39_*_150	1v39	*	SAHS-ADENOSYL-L-HOMOCYSTEINE	L - 159
1v39_*_150	1v39	*	SAHS-ADENOSYL-L-HOMOCYSTEINE	K - 175
2tps_A_95	2tps	A	MGMAGNESIUM ION	H - 107
2tps_A_95	2tps	A	TPSTHIAMIN PHOSPHATE	H - 107
2tps_A_95	2tps	A	POPPYROPHOSPHATE 2-	H - 107
2tps_A_95	2tps	A	MGMAGNESIUM ION	I - 108
2tps_A_95	2tps	A	POPPYROPHOSPHATE 2-	I - 108

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gpj_A_29	1gpj	A	ACTRECOGNITION AND ACTIVE SITE, HERE OCCUPIED BY THE INHIBITOR GLUTAMYCIN	T - 47
1ojx_A_158	1ojx	A	ACTLYS 177 FORMS SCHIFF-BASE WITH SUBSTRATE ASP 24 IS THE GENERAL BASE, TYR 146 IS THE PROTON DONOR	K - 177

Clusters included in this Subclass

CLUSTER: HE.2.62

CLUSTER: HE.3.17

CLUSTER: HE.4.18

CLUSTER: HE.5.253

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