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Information on SUBCLASS 3.13.1
Subclass Accession number: 8369
Subclass: 3.13.1 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 9

Average sequence ID (%) : 23.6 +/- 28.0
Average RMSD (Å) : 0.811 +/- 0.117

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XhGpXXh
(φψ)-conformation: aaeapbb
Pattern: [aelm]xx[ilw]x[EHKRS]x[FIY][GN][DNST]xx[CFV][acfl]
Conservation:-0.508-0.917-0.929-0.309-0.6520.285-0.3701.7582.4540.539-0.487-0.4620.226-0.628
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b6a_*_3971b6a   -403416LNVINENFGTLAFCHHHHHHHTTTS-EEaaaaaaaaeaxxbb
1bxn_A_3891bxn   A389402MHQLIHLFGDDVVLHHHHHHHH-SS-EEaaaaaaaaeaxbbx
1cjb_A_471cjb   A5871AYDIKKVYNNEEFHHHHHHHHHTT--EEaaaaaaaaeaxxbb
1gg4_A_2241gg4   A224236WLNWQSVIGSRKV.HHHHHHHHTTSEE.aaaaaaaaeaxxb.
1gk8_A_3871gk8   A387400MPALVEIFGDDACLHHHHHHHH-SSSEEaaaaaaaaeaxbbb
1mtz_A_791mtz   A87100EALRSKLFGNEKVFHHHHHHHHTT--EEaaaaaaaaeaxxbb
1rbl_A_3871rbl   A387400MPALVEIFGDDSVLHHHHHHHH-SS-EEaaaaaaaaeaxbbb
1xgs_A_2171xgs   A223236LAKIKREYGTLPFAHHHHHHHTTTS-EEaaaaaaaaeaxpbx
8ruc_A_3878ruc   A387400MPALTEIFGDDSVLHHHHHHHH-SSSEEaaaaaaaaeaxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b6a_*_3971b6a   *     TNP3,5,6,8-TETRAMETHYL-N-METHYL PHENANTHROLINIUM A - 414
1bxn_A_3891bxn   A     PO4PHOSPHATE ION Q - 403
1bxn_A_3891bxn   A     PO4PHOSPHATE ION F - 404
1cjb_A_471cjb   A     MGMAGNESIUM ION L - 75
1cjb_A_471cjb   A     IRP(1S)-1(9-DEAZAHYPOXANTHIN-9YL)1,4-DIDEOXY-1,4-IMINO-D-RIBITOL-5-PHOSPHATE L - 75
1cjb_A_471cjb   A     POPPYROPHOSPHATE 2- L - 75
1cjb_A_471cjb   A     MGMAGNESIUM ION L - 76
1cjb_A_471cjb   A     IRP(1S)-1(9-DEAZAHYPOXANTHIN-9YL)1,4-DIDEOXY-1,4-IMINO-D-RIBITOL-5-PHOSPHATE L - 76
1cjb_A_471cjb   A     POPPYROPHOSPHATE 2- L - 76
1gg4_A_2241gg4   A     MSESELENOMETHIONINE W - 224
1gg4_A_2241gg4   A     MSESELENOMETHIONINE W - 227
1gg4_A_2241gg4   A     MSESELENOMETHIONINE I - 231
1gg4_A_2241gg4   A     MSESELENOMETHIONINE V - 236
1gk8_A_3871gk8   A     KCXLYSINE NZ-CARBOXYLIC ACID Q - 401
1gk8_A_3871gk8   A     CAP2-CARBOXYARABINITOL-1,5-DIPHOSPHATE Q - 401
1rbl_A_3871rbl   A     CBXCARBOXY GROUP Q - 401

Clusters included in this Subclass
CLUSTER: HE.4.65