ArchDB - Biological DataBase of Protein Loops

Information on 8ruc

PDB: 8ruc
Compound: ribulose-1,5-bisphosphate carboxylaseOXYGENASE
Classification: LYASE (CARBON-CARBON)
Entry date in PDB: 1996-08-01
Resolution [Å]: 1.60
R-Factor: 0.211

CHAIN: A

SWISS-PROT/TREMBL: P00875
   KEYWORD: 3D-structure    Acetylation    Carbon dioxide fixation    Chloroplast    Lyase    Magnesium    Metal-binding    Monooxygenase    Oxidoreductase    Photorespiration    Photosynthesis
EC: 4.1.1.39
SCOP: c.1.14.1 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    RuBisCo, C-terminal domain    RuBisCo, large subunit, C-terminal domain    Ribulose 1,5-bisphosphate carboxylase-oxygenase    Spinach (Spinacia oleracea)
SCOP: d.58.9.1 Alpha and beta proteins (a+b)    Ferredoxin-like    RuBisCO, large subunit, small (N-terminal) domain    Ribulose 1,5-bisphosphate carboxylase-oxygenase    Ribulose 1,5-bisphosphate carboxylase-oxygenase    Spinach (Spinacia oleracea)
GO:  ribulose bisphosphate carboxylase complex (sensu Magnoliophyta)    ribulose-bisphosphate carboxylase activity    carbon utilization by fixation of carbon dioxide

CHAIN: C

CHAIN: E

CHAIN: G

CHAIN: I

SWISS-PROT/TREMBL: P00870
   KEYWORD: 3D-structure    Carbon dioxide fixation    Chloroplast    Lyase    Monooxygenase    Multigene family    Oxidoreductase    Photorespiration    Photosynthesis    Transit peptide
EC: 4.1.1.39
SCOP: d.73.1.1 Alpha and beta proteins (a+b)    RuBisCO, small subunit    RuBisCO, small subunit    RuBisCO, small subunit    Ribulose 1,5-bisphosphate carboxylase-oxygenase    Spinach (Spinacia oleracea)
GO:  ribulose bisphosphate carboxylase complex (sensu Magnoliophyta)    ribulose-bisphosphate carboxylase activity    carbon utilization by fixation of carbon dioxide

CHAIN: J

CHAIN: K

CHAIN: L

Image Source: PDB

Stored Loops of 8ruc

Loops in ArchDB95 clusters

8ruc_A_308 - EH => SUBCLASS : 1.1.13
8ruc_A_130 - EH => SUBCLASS : 1.1.16
8ruc_I_68 - EH => SUBCLASS : 9.13.1
8ruc_A_366 - AR => SUBCLASS : 6.15.1
8ruc_A_437 - HH => SUBCLASS : 1.2.41
8ruc_A_142 - HH => SUBCLASS : 7.18.1
8ruc_I_23 - HE => SUBCLASS : 1.1.1
8ruc_I_80 - HE => SUBCLASS : 4.1.1
8ruc_I_98 - HA => SUBCLASS : 4.1.2
8ruc_A_83 - HA => SUBCLASS : 6.8.1

Loops in ArchDB-EC clusters

8ruc_A_142 - HH => SUBCLASS : 7.10.1

Loops not clustered in ArchDB

8ruc_A_366 - AR
8ruc_A_36 - EH
8ruc_A_399 - EH
8ruc_A_375 - EH
8ruc_A_325 - EH
8ruc_A_290 - EH
8ruc_A_264 - EH
8ruc_A_240 - EH
8ruc_A_169 - EH
8ruc_A_97 - EH
8ruc_A_353 - HA
8ruc_I_39 - HA
8ruc_A_83 - HA
8ruc_A_353 - HA
8ruc_I_39 - HA
8ruc_I_98 - HA
8ruc_A_274 - HE
8ruc_A_21 - HE
8ruc_A_77 - HE
8ruc_A_113 - HE
8ruc_A_155 - HE
8ruc_A_214 - HE
8ruc_A_247 - HE
8ruc_A_298 - HE
8ruc_A_387 - HE
8ruc_A_339 - HE
8ruc_A_311 - HE
8ruc_A_404 - HH
8ruc_A_269 - HH
8ruc_A_182 - HH
8ruc_A_50 - HH
8ruc_A_413 - HH

Homologous structures to 8ruc classified in ArchDB

1aa1 B - percentage of sequence identity: 99
1aa1 E - percentage of sequence identity: 99
1aa1 H - percentage of sequence identity: 99
1aa1 L - percentage of sequence identity: 99
1aus L - percentage of sequence identity: 99
1aus M - percentage of sequence identity: 99
1aus N - percentage of sequence identity: 99
1aus O - percentage of sequence identity: 99
1ej7 L - percentage of sequence identity: 93
1gk8 A - percentage of sequence identity: 87
1gk8 C - percentage of sequence identity: 87
1gk8 E - percentage of sequence identity: 87
1gk8 G - percentage of sequence identity: 87
1ir1 A - percentage of sequence identity: 100
1ir1 B - percentage of sequence identity: 100
1ir1 C - percentage of sequence identity: 100
1ir1 D - percentage of sequence identity: 100
1ir1 S - percentage of sequence identity: 94
1ir2 A - percentage of sequence identity: 87
1ir2 B - percentage of sequence identity: 87
1ir2 C - percentage of sequence identity: 87
1ir2 D - percentage of sequence identity: 87
1ir2 E - percentage of sequence identity: 87
1ir2 F - percentage of sequence identity: 87
1ir2 G - percentage of sequence identity: 87
1ir2 H - percentage of sequence identity: 87
1ir2 S - percentage of sequence identity: 87
1ir2 T - percentage of sequence identity: 87
1ir2 U - percentage of sequence identity: 87
1ir2 V - percentage of sequence identity: 87
1ir2 W - percentage of sequence identity: 87
1ir2 X - percentage of sequence identity: 87
1ir2 Y - percentage of sequence identity: 87
1ir2 Z - percentage of sequence identity: 87
1rbl A - percentage of sequence identity: 82
1rbl B - percentage of sequence identity: 82
1rbl C - percentage of sequence identity: 82
1rbl D - percentage of sequence identity: 82
1rbl E - percentage of sequence identity: 82
1rbl F - percentage of sequence identity: 82
1rbl G - percentage of sequence identity: 82
1rbl H - percentage of sequence identity: 82
1rbo B - percentage of sequence identity: 99
1rbo E - percentage of sequence identity: 99
1rbo H - percentage of sequence identity: 99
1rbo L - percentage of sequence identity: 99
1rco B - percentage of sequence identity: 99
1rco E - percentage of sequence identity: 99
1rco H - percentage of sequence identity: 99
1rco K - percentage of sequence identity: 99
1rco L - percentage of sequence identity: 99
1rco O - percentage of sequence identity: 99
1rco R - percentage of sequence identity: 99
1rco V - percentage of sequence identity: 99
1rcx B - percentage of sequence identity: 99
1rcx E - percentage of sequence identity: 99
1rcx H - percentage of sequence identity: 99
1rcx K - percentage of sequence identity: 99
1rcx L - percentage of sequence identity: 99
1rcx O - percentage of sequence identity: 99
1rcx R - percentage of sequence identity: 99
1rcx V - percentage of sequence identity: 99
1rlc L - percentage of sequence identity: 92
1rld A - percentage of sequence identity: 93
1rld B - percentage of sequence identity: 93
1rsc A - percentage of sequence identity: 81
1rsc B - percentage of sequence identity: 81
1rsc C - percentage of sequence identity: 81
1rsc D - percentage of sequence identity: 81
1rsc E - percentage of sequence identity: 81
1rsc F - percentage of sequence identity: 81
1rsc G - percentage of sequence identity: 81
1rsc H - percentage of sequence identity: 81
1rxo B - percentage of sequence identity: 99
1rxo E - percentage of sequence identity: 99
1rxo H - percentage of sequence identity: 99
1rxo L - percentage of sequence identity: 99
1svd A - percentage of sequence identity: 73
1upm B - percentage of sequence identity: 100
1upm E - percentage of sequence identity: 100
1upm H - percentage of sequence identity: 100
1upm K - percentage of sequence identity: 100
1upm L - percentage of sequence identity: 100
1upm O - percentage of sequence identity: 100
1upm R - percentage of sequence identity: 100
1upm V - percentage of sequence identity: 100
1upp A - percentage of sequence identity: 100
1upp C - percentage of sequence identity: 100
1upp E - percentage of sequence identity: 100
1upp G - percentage of sequence identity: 100
1uw9 A - percentage of sequence identity: 87
1uw9 B - percentage of sequence identity: 87
1uw9 E - percentage of sequence identity: 87
1uw9 H - percentage of sequence identity: 87
1uw9 K - percentage of sequence identity: 87
1uw9 O - percentage of sequence identity: 87
1uw9 R - percentage of sequence identity: 87
1uw9 V - percentage of sequence identity: 87
1uwa A - percentage of sequence identity: 87
1uwa B - percentage of sequence identity: 87
1uwa E - percentage of sequence identity: 87
1uwa H - percentage of sequence identity: 87
1uwa K - percentage of sequence identity: 87
1uwa O - percentage of sequence identity: 87
1uwa R - percentage of sequence identity: 87
1uwa V - percentage of sequence identity: 87
1uzd A - percentage of sequence identity: 87
1uzd B - percentage of sequence identity: 87
1uzd E - percentage of sequence identity: 87
1uzd H - percentage of sequence identity: 87
1uzd K - percentage of sequence identity: 87
1uzd O - percentage of sequence identity: 87
1uzd R - percentage of sequence identity: 87
1uzd V - percentage of sequence identity: 87
1uzh A - percentage of sequence identity: 87
1uzh B - percentage of sequence identity: 87
1uzh E - percentage of sequence identity: 87
1uzh H - percentage of sequence identity: 87
1uzh K - percentage of sequence identity: 87
1uzh O - percentage of sequence identity: 87
1uzh R - percentage of sequence identity: 87
1uzh V - percentage of sequence identity: 87
1wdd A - percentage of sequence identity: 91
1wdd E - percentage of sequence identity: 91
3rub L - percentage of sequence identity: 92
3rub S - percentage of sequence identity: 76
4rub A - percentage of sequence identity: 92
4rub B - percentage of sequence identity: 92
4rub C - percentage of sequence identity: 92
4rub D - percentage of sequence identity: 92
8ruc A - percentage of sequence identity: 100
8ruc C - percentage of sequence identity: 100
8ruc E - percentage of sequence identity: 100
8ruc G - percentage of sequence identity: 100