Logo
Information on SUBCLASS 1.4.1
Subclass Accession number: 8869
Subclass: 1.4.1 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 33

Average sequence ID (%) : 18.1 +/- 17.2
Average RMSD (Å) : 0.533 +/- 0.210

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: XXGXp
(φψ)-conformation: aaeaa
Pattern: [acfilpvy]xxx[G]x[degknrst]x[afgilvy]x
Conservation:-0.201-0.439-0.429-0.3162.804-0.483-0.028-0.491-0.041-0.377
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8h_*_3081a8h   -312321LEKYGRDALRHHHH-HHHHHaaaaeaaaaa
1aop_*_3071aop   -311320LERVGVETFKHHHH-HHHHHaaaaMaaaaa
1b31_A_1441b31   A146155YNVIGEDYVRHHHT-THHHHaaaaeaaaaa
1d3g_A_3571d3g   A359368LTFWGPPVVGHHHH-THHHHaaaaeaaaaa
1d3v_A_2001d3v   A203212VDKLGIGKVMHHHH-HHHHHaaaaeaaaaa
1dbt_A_361dbt   A3948FYQEGPSIVKHHHHTHHHHHaaaaeaaaaa
1dvj_A_451dvj   A4857VLSEGMDIIAHHHH-THHHHaaaaeaaaaa
1exp_*_1401exp   -142151QQKLGNGYIEHHHHGGGHHHaaaaeaaaaa
1f0y_A_2461f0y   A250259LDYVGLDTTKHHHH-HHHHHaaaaeaaaaa
1f76_A_3191f76   A321330FIFKGPPLIKHHHH-HHHHHaaaaeaaaaa
1fiz_A_2351fiz   A239248ASKIGSNALQHHHH-HHHHHaaaaeaaaaa
1geh_A_2561geh   A256265VVITGWGALRHHHH-HHHHHaaaaeaaaaa
1geq_A_891geq   A92101IYRAGVRNFLHHHH-HHHHHaaaaMaaaaa
1gk8_A_2691gk8   A269278YLTGGFTANTHHHH-HHHHHaaaaeaaaaa
1h16_A_1821h16   A184193VALYGIDYLMHHHH-HHHHHaaaaeaaaaa
1h8e_D_3601h8e   D360369PNIVGSEHYDHHHH-HHHHHaaaaeaaaaa
1hl2_A_2291hl2   A246255LIKTGVFRGLHHHH-HHHHHaaaaeaaaaa
1i1w_A_1431i1w   A145154LNVIGEDYIPHHHT-TTHHHaaaaeaaaaa
1iat_A_2811iat   A284293ALHVGFDNFEHHHH-HHHHHaaaaeaaaaa
1jsw_A_4161jsw   A416425NPFIGHHNGDHHHH-HHHHHaaaaMaaaaa
1lw9_A_931lw9   A103112VFQMGETGVAHHHH-HHHHHaaaaeaaaaa
1m2r_A_2381m2r   A246255AKVLGTDGLNHHHH-HHHHHaaaaeaaaaa
1mum_A_1621mum   A162171LAVEGLDAAIHHHH-HHHHHaaaaeaaaaa
1na7_A_2381na7   A246255AKVLGTEDLYHHHH-SHHHHaaaaeaaaaa
1o0w_A_1221o0w   A137146YLDQGYEKIKHHHH-HHHHHaaaaeaaaaa
1obd_A_1761obd   A180189AELVGEDLSRHHHH-HHHHHaaaaeaaaaa
1pmi_*_1661pmi   -169178NEIIGQELVDHHHH-HHHHHaaaaeaaaaa
1pmi_*_771pmi   -7887QEYLGESIITHHHT-HHHHHaaaaeaaaaa
1q6o_A_361q6o   A3948CVGEGVRAVRHHHH-THHHHaaaaeaaaaa
1rbl_A_2691rbl   A269278FLTAGFTANTHHHH-HHHHHaaaaeaaaaa
1ujp_A_1001ujp   A103112VLAWGPERFFHHHH-HHHHHaaaaeaaaaa
2cev_A_1952cev   A198207VDRLGMTRVMHHHH-HHHHHaaaaeaaaaa
3thi_A_1943thi   A204213INMAGEKPSQHHHH-HHHHHaaaaeaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aop_*_3071aop   *     SRMSIROHEME K - 308
1d3g_A_3571d3g   A     FMNFLAVIN MONONUCLEOTIDE T - 357
1d3g_A_3571d3g   A     FMNFLAVIN MONONUCLEOTIDE A - 358
1d3g_A_3571d3g   A     BRE2-BIPHENYL-4-YL-6-FLUORO-3-METHYL-QUINOLINE-4-CARBOXYLIC ACID L - 359
1d3g_A_3571d3g   A     BRE2-BIPHENYL-4-YL-6-FLUORO-3-METHYL-QUINOLINE-4-CARBOXYLIC ACID T - 360
1d3g_A_3571d3g   A     BRE2-BIPHENYL-4-YL-6-FLUORO-3-METHYL-QUINOLINE-4-CARBOXYLIC ACID F - 361
1d3g_A_3571d3g   A     BRE2-BIPHENYL-4-YL-6-FLUORO-3-METHYL-QUINOLINE-4-CARBOXYLIC ACID G - 363
1d3g_A_3571d3g   A     BRE2-BIPHENYL-4-YL-6-FLUORO-3-METHYL-QUINOLINE-4-CARBOXYLIC ACID P - 364
1f0y_A_2461f0y   A     CAAACETOACETYL-COENZYME A L - 249
1f0y_A_2461f0y   A     CAAACETOACETYL-COENZYME A Y - 252
1f0y_A_2461f0y   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Y - 252
1f0y_A_2461f0y   A     CAAACETOACETYL-COENZYME A V - 253
1f0y_A_2461f0y   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 253
1f0y_A_2461f0y   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 254
1f0y_A_2461f0y   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE D - 256
1f0y_A_2461f0y   A     CAAACETOACETYL-COENZYME A T - 257
1f0y_A_2461f0y   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 257
1f0y_A_2461f0y   A     CAAACETOACETYL-COENZYME A I - 261
1f0y_A_2461f0y   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 261
1f76_A_3191f76   A     FMNFLAVIN MONONUCLEOTIDE S - 319
1f76_A_3191f76   A     FMNFLAVIN MONONUCLEOTIDE G - 320
1f76_A_3191f76   A     MSESELENOMETHIONINE F - 321
1f76_A_3191f76   A     MSESELENOMETHIONINE P - 326
1f76_A_3191f76   A     OROOROTIC ACID P - 326
1f76_A_3191f76   A     OROOROTIC ACID P - 327
1f76_A_3191f76   A     MSESELENOMETHIONINE I - 329
1f76_A_3191f76   A     MSESELENOMETHIONINE K - 330
1gk8_A_2691gk8   A     EGLETHYLENE GLYCOL Y - 269
1gk8_A_2691gk8   A     EGLETHYLENE GLYCOL L - 270
1gk8_A_2691gk8   A     EGLETHYLENE GLYCOL T - 271
1gk8_A_2691gk8   A     EGLETHYLENE GLYCOL G - 272
1gk8_A_2691gk8   A     EGLETHYLENE GLYCOL G - 273
1gk8_A_2691gk8   A     EGLETHYLENE GLYCOL F - 274
1gk8_A_2691gk8   A     HYP4-HYDROXYPROLINE A - 281
1gk8_A_2691gk8   A     SMCS-METHYLCYSTEINE Y - 283
1gk8_A_2691gk8   A     HYP4-HYDROXYPROLINE R - 285
1h16_A_1821h16   A     PG4TETRAETHYLENE GLYCOL D - 195
1h16_A_1821h16   A     PG4TETRAETHYLENE GLYCOL A - 198
1h16_A_1821h16   A     PG4TETRAETHYLENE GLYCOL Q - 199
1h16_A_1821h16   A     PG4TETRAETHYLENE GLYCOL F - 200
1h8e_D_3601h8e   D     ADPADENOSINE-5'-DIPHOSPHATE Y - 368
1h8e_D_3601h8e   D     ADPADENOSINE-5'-DIPHOSPHATE R - 372
1hl2_A_2291hl2   A     3PY3-HYDROXYPYRUVIC ACID F - 252
1i1w_A_1431i1w   A     UNXUNKNOWN ATOM OR ION L - 145
1i1w_A_1431i1w   A     EOHETHANOL L - 145
1i1w_A_1431i1w   A     UNXUNKNOWN ATOM OR ION I - 148
1i1w_A_1431i1w   A     UNXUNKNOWN ATOM OR ION G - 149
1i1w_A_1431i1w   A     UNXUNKNOWN ATOM OR ION E - 150
1i1w_A_1431i1w   A     EOHETHANOL E - 150
1i1w_A_1431i1w   A     UNXUNKNOWN ATOM OR ION D - 151
1i1w_A_1431i1w   A     UNXUNKNOWN ATOM OR ION Q - 158
1i1w_A_1431i1w   A     EOHETHANOL Q - 158
1i1w_A_1431i1w   A     UNXUNKNOWN ATOM OR ION T - 159
1i1w_A_1431i1w   A     UNXUNKNOWN ATOM OR ION A - 160
1i1w_A_1431i1w   A     EOHETHANOL R - 161
1i1w_A_1431i1w   A     UNXUNKNOWN ATOM OR ION A - 162
1i1w_A_1431i1w   A     UNXUNKNOWN ATOM OR ION A - 163
1jsw_A_4161jsw   A     ACTACETATE ION I - 426
1jsw_A_4161jsw   A     ACTACETATE ION I - 430
1q6o_A_361q6o   A     MGMAGNESIUM ION T - 36
1q6o_A_361q6o   A     LG6L-GULURONIC ACID 6-PHOSPHATE T - 36
1q6o_A_361q6o   A     LG6L-GULURONIC ACID 6-PHOSPHATE I - 37
2cev_A_1952cev   A     GAIGUANIDINE M - 195
2cev_A_1952cev   A     GAIGUANIDINE H - 196
2cev_A_1952cev   A     GAIGUANIDINE E - 197
2cev_A_1952cev   A     GAIGUANIDINE D - 199
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h16_A_1821h16   A PG1PG4 BINDING SITE FOR CHAIN AA - 198
1h16_A_1821h16   A PG1PG4 BINDING SITE FOR CHAIN AQ - 199

Clusters included in this Subclass
CLUSTER: HH.1.8
CLUSTER: HH.2.12
CLUSTER: HH.2.145
CLUSTER: HH.3.37
CLUSTER: HH.4.96