Information on SUBCLASS 2.2.6 |
Subclass Accession number: 5352
Subclass: 2.2.6 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 34 Average sequence ID (%) : 11.6 +/- 14.2 Average RMSD (Å) : 0.679 +/- 0.209 Consensus geometry
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Consensus Sequence: | XXhXXX |
(φψ)-conformation: | aapabb |
Pattern: | x | [acfikltv] | [adekqrst] | x | [acfklmv] | [dehkpqrs] | x | x | x | x |
Conservation: | -1.389 | 0.479 | 0.453 | -0.482 | 1.612 | 0.379 | -0.810 | -1.398 | 1.016 | 0.139 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a8i_*_441 | 1a8i | - | 445 | 454 | CIAGSHAVNG | HHHT-SEEEE | aaaababbbx |
1bkj_A_69 | 1bkj | A | 69 | 78 | YVESAAEFLV | HHHHSSEEEE | aaaaxabbbb |
1c7n_A_183 | 1c7n | A | 192 | 201 | IVLKSDLMLW | HHHHSS-EEE | aaaabaxxbb |
1cbu_A_104 | 1cbu | A | 121 | 130 | ACQRCPAKVV | HHHH--SEEE | aaaaxaxxxb |
1ef8_A_84 | 1ef8 | A | 91 | 100 | MIQKFPKPII | HHHH-SS-EE | aaaaxabxbb |
1fc4_A_137 | 1fc4 | A | 142 | 151 | GVRLCKAKRY | HHHTS-SEEE | aaaaxapxbb |
1gg4_A_83 | 1gg4 | A | 94 | 103 | VRQQVPARVV | HHHHS--EEE | aaaabapxxb |
1gv9_A_186 | 1gv9 | A | 190 | 198 | GATQALASC. | HHHH-SEEE. | aaaapabbb. |
1hnu_A_94 | 1hnu | A | 107 | 116 | AFIKHSKVLI | HHHH--SEEE | aaaapaxxxb |
1inl_A_212 | 1inl | A | 222 | 231 | ISKVFPITRV | HHHH-SEEEE | aaaaxabbbx |
1j1u_A_17 | 1j1u | A | 22 | 31 | EVLKKDEKSA | HHHHSSSEEE | aaaaxabbbb |
1kfs_A_336 | 1kfs | A | 345 | 354 | KLEKAPVFAF | HHHHSSSEEE | aaaaxabbxb |
1l5w_A_390 | 1l5w | A | 393 | 400 | WAKLAVVH.. | HHHH-SEE.. | aaaaxabb.. |
1li4_A_308 | 1li4 | A | 311 | 320 | LNENAVEKVN | HHHH-SEEEE | aaaaxabbbx |
1lxj_A_23 | 1lxj | A | 32 | 41 | KIRESPLKST | HHHTSSSEEE | aaaaxaxxbb |
1ma3_A_171 | 1ma3 | A | 180 | 189 | EAKHCDAFMV | HHHH-SEEEE | aaaaxabbbx |
1nnl_A_203 | 1nnl | A | 205 | 213 | VKDNAKWYI. | HHHH-SEEE. | aaaaxabbb. |
1nox_*_75 | 1nox | - | 75 | 84 | HVEEAPVVLV | HHHHSSEEEE | aaaaxabbxb |
1np3_A_66 | 1np3 | A | 69 | 78 | AVAAADVVMI | HHHT-SEEEE | aaaababbxx |
1nzy_A_74 | 1nzy | A | 95 | 104 | KIIRVKRPVL | HHHH-SS-EE | aaaapabxbb |
1ozh_A_267 | 1ozh | A | 271 | 280 | LLQLADLVIC | HHHH-SEEEE | aaaapabbbx |
1ozn_A_269 | 1ozn | A | 274 | 282 | WLQKFRGSS. | HHHH--SEE. | aaaapaxbb. |
1pox_A_199 | 1pox | A | 208 | 217 | TLLAAERPLI | HHHH-SSEEE | aaaaxabxbb |
1psz_A_73 | 1psz | A | 78 | 87 | KTSEADLIFY | HHHH-SEEEE | aaaaxabbbb |
1pvd_A_194 | 1pvd | A | 207 | 216 | LVKDAKNPVI | HHHH-SSEEE | aaaaxabxbb |
1qmg_A_186 | 1qmg | A | 189 | 198 | TISGSDLVLL | HHHT-SEEEE | aaaaxabbbx |
1qwi_A_126 | 1qwi | A | 127 | 136 | VSQVLKAEIT | HHHH--SEEE | aaaaxaxxbb |
1rkq_A_226 | 1rkq | A | 228 | 237 | MIEYAGVGVA | HHHHSSEEEE | aaaaxabbbb |
1s5p_A_197 | 1s5p | A | 203 | 212 | ALSMADIFIA | HHHH-SEEEE | aaaaxabbbb |
1tfr_*_101 | 1tfr | - | 115 | 124 | LKAYMPYIVM | HHHHSSSEEE | aaaaxabxbx |
1uds_A_177 | 1uds | A | 179 | 188 | EDSAAQVDMN | HHHT-SEEEE | aaaaxabbbb |
1upa_A_202 | 1upa | A | 212 | 221 | LLAEAKHPVL | HHHH-SSEEE | aaaaxabxbb |
1vhv_A_17 | 1vhv | A | 22 | 31 | AVREADEVYV | HHHH-SEEEE | aaaaxabbbb |
1vi9_A_136 | 1vi9 | A | 136 | 143 | GLPASDII.. | HHHH-SEE.. | aaaaxabb.. |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1kfs_A_336 | 1kfs | A | EXOEXONUCLEASE ACTIVE SITE. | D - 355 |
1kfs_A_336 | 1kfs | A | EXOEXONUCLEASE ACTIVE SITE. | E - 357 |
Clusters included in this Subclass |
CLUSTER: HE.2.32 |
CLUSTER: HE.3.21 |