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Information on SUBCLASS 3.1.2
Subclass Accession number: 184
Subclass: 3.1.2 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 31

Average sequence ID (%) : 12.3 +/- 15.4
Average RMSD (Å) : 0.732 +/- 0.185

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: pXXhpXh
(φψ)-conformation: aalpabb
Pattern: [afiklmtv][aeknqrt][adegknqrst]x[adegknqrs][acfgilpvy][dehknqrty]x[afgilmvwy][afgilvwy]
Conservation:0.2900.2460.387-0.1871.600-1.607-0.293-1.2011.307-0.540
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1avq_A_1521avq   A162171MWVTRKNAWYHHHHT-SEEEaaaavxabbx
1ax4_A_761ax4   A8695KELFNYDYIIHHHH---EEEaaaavxabbb
1bf2_*_2111bf2   -214223LASLGVTAVEHHHHT--EEEaaaagxabbb
1chu_A_2901chu   A301310MKRLGADCMFHHHHT-S-EEaaaavxabbb
1cnz_A_921cnz   A99108RKHFKLFSNLHHHHT--EEEaaaalxabbb
1cvl_*_611cvl   -7382LAATGATKVNHHHH--S-EEaaaavxabbb
1doz_A_2351doz   A243252FEQKGYQAFVHHHH--SEEEaaaavpabbb
1dp4_A_641dp4   A7382KWEHSPAVFLHHHH--SEEEaaaalxabbb
1g5c_A_641g5c   A7483IYALGDNEIIHHHH---EEEaaaavxabbb
1h3g_A_1541h3g   A157166IAGLGFTQLWHHHHT--EEEaaaagxabbb
1hjr_A_401hjr   A5564ITQFQPDYFAHHHH--SEEEaaaavxabbb
1j0h_A_1821j0h   A185194LVDLGITGIYHHHHT--EEEaaaagxabbb
1j0h_A_3031j0h   A317326IREFDIDGWRHHHH---EEEaaaavxabbx
1j3w_A_111j3w   A2433LRETGARYALHHHH--SEEEaaaavxabbb
1j5v_A_2181j5v   A229238TRKYNFKTVGHHHH--SEEEaaaalxabbb
1jf9_A_2121jf9   A212221VQALDCDFYVHHHHT-SEEEaaaavxabbb
1ji2_A_1791ji2   A182191LEELGVTALYHHHHT-SEEEaaaagxabbb
1jwi_B_471jwi   B5867LEKMRIVLVWHHTT---EEEaaaalbabbx
1kcf_A_911kcf   A106115HEKFNPHVILHHHH--SEEEaaaalxabbb
1kzf_A_1181kzf   A130139AQNNAYGNIYHHHTT-SEEEaaaavbabbx
1m6y_A_851m6y   A8998LKTLGIEKVDHHHTT-S-EEaaaavbabba
1nu0_A_421nu0   A4958LKEWQPDEIIHHHH--S-EEaaaalxabbb
1okk_D_2351okk   D244253HEAVGLTGVIHHHH--SEEEaaaavxabbb
1pvm_A_221pvm   A2938MNENHLYGLVHHHHT--EEEaaaavbabbx
1q8i_A_2011q8i   A212221FANYDPDVIIHHHH--SEEEaaaalxabbb
1qho_A_581qho   A6170LKQLGVTTIWHHHHT--EEEaaaagxabxx
1qme_A_2671qme   A281290QEKVKGKYMTHHHH--SEEEaaaalxabbb
1qz9_A_2131qz9   A213222LHQAGADYAIHHHHT-SEEEaaaavpabbb
1s4n_A_2601s4n   A264273MQENEKVYGFHHHTT--EEEaaaalbabbb
2dkb_*_1112dkb   -123132KLVTGKYEIVHHHHS--EEEaaaavbaxbb
2gsa_A_1232gsa   A135144RAYTGRDKIIHHHH---EEEaaaavbaxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1avq_A_1521avq   A     PO4PHOSPHATE ION Q - 157
1avq_A_1521avq   A     PO4PHOSPHATE ION S - 161
1cnz_A_921cnz   A     MNMANGANESE (II) ION R - 109
1doz_A_2351doz   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED Q - 236
1g5c_A_641g5c   A     ZNZINC ION H - 87
1g5c_A_641g5c   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID H - 87
1h3g_A_1541h3g   A     MSESELENOMETHIONINE L - 154
1h3g_A_1541h3g   A     MSESELENOMETHIONINE D - 155
1h3g_A_1541h3g   A     MSESELENOMETHIONINE I - 157
1h3g_A_1541h3g   A     MSESELENOMETHIONINE A - 158
1h3g_A_1541h3g   A     MSESELENOMETHIONINE F - 162
1h3g_A_1541h3g   A     CACALCIUM ION F - 162
1h3g_A_1541h3g   A     MSESELENOMETHIONINE T - 163
1h3g_A_1541h3g   A     CACALCIUM ION T - 163
1h3g_A_1541h3g   A     MSESELENOMETHIONINE Q - 164
1h3g_A_1541h3g   A     CACALCIUM ION Q - 164
1h3g_A_1541h3g   A     MSESELENOMETHIONINE L - 165
1h3g_A_1541h3g   A     CACALCIUM ION L - 165
1h3g_A_1541h3g   A     MSESELENOMETHIONINE W - 166
1j5v_A_2181j5v   A     MSESELENOMETHIONINE R - 218
1j5v_A_2181j5v   A     MSESELENOMETHIONINE Y - 221
1j5v_A_2181j5v   A     MSESELENOMETHIONINE A - 222
1j5v_A_2181j5v   A     MSESELENOMETHIONINE A - 225
1j5v_A_2181j5v   A     MSESELENOMETHIONINE Y - 232
1j5v_A_2181j5v   A     MSESELENOMETHIONINE F - 234
1j5v_A_2181j5v   A     MSESELENOMETHIONINE V - 237
1j5v_A_2181j5v   A     MSESELENOMETHIONINE G - 238
1j5v_A_2181j5v   A     MSESELENOMETHIONINE I - 239
1jf9_A_2121jf9   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 223
1m6y_A_851m6y   A     MSESELENOMETHIONINE I - 100
1nu0_A_421nu0   A     MSESELENOMETHIONINE I - 45
1nu0_A_421nu0   A     MSESELENOMETHIONINE L - 48
1nu0_A_421nu0   A     MSESELENOMETHIONINE L - 49
1nu0_A_421nu0   A     MSESELENOMETHIONINE W - 52
1nu0_A_421nu0   A     MSESELENOMETHIONINE Q - 53
1nu0_A_421nu0   A     MSESELENOMETHIONINE P - 54
1nu0_A_421nu0   A     MSESELENOMETHIONINE D - 55
1nu0_A_421nu0   A     MSESELENOMETHIONINE E - 56
1nu0_A_421nu0   A     MSESELENOMETHIONINE I - 57
1nu0_A_421nu0   A     MSESELENOMETHIONINE I - 58
1nu0_A_421nu0   A     MSESELENOMETHIONINE V - 59
1nu0_A_421nu0   A     MSESELENOMETHIONINE L - 63
1okk_D_2351okk   D     GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER V - 254
1okk_D_2351okk   D     GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER T - 255
1qz9_A_2131qz9   A     PLPPYRIDOXAL-5'-PHOSPHATE G - 223
2dkb_*_1112dkb   *     PLPPYRIDOXAL-5'-PHOSPHATE G - 111
2dkb_*_1112dkb   *     PLPPYRIDOXAL-5'-PHOSPHATE A - 112
2dkb_*_1112dkb   *     PLPPYRIDOXAL-5'-PHOSPHATE E - 113
2dkb_*_1112dkb   *     PLPPYRIDOXAL-5'-PHOSPHATE S - 114
2dkb_*_1112dkb   *     PLPPYRIDOXAL-5'-PHOSPHATE N - 115
2gsa_A_1232gsa   A     PMP4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE G - 123
2gsa_A_1232gsa   A     PMP4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE T - 124
2gsa_A_1232gsa   A     PMP4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE E - 125
2gsa_A_1232gsa   A     PLPPYRIDOXAL-5'-PHOSPHATE E - 125
2gsa_A_1232gsa   A     PMP4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE C - 127
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1okk_D_2351okk   D M4DFTSY - GTPASE MOTIF IVT - 255

Clusters included in this Subclass
CLUSTER: HE.3.49
CLUSTER: HE.4.9