ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 4.4.1

Subclass Accession number: 8432
Subclass: 4.4.1

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 29

Average sequence ID (%) : 16.2 +/- 18.8
Average RMSD (Å) : 0.862 +/- 0.330

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 135-180

rho (°): 225-270

Consensus Sequence:	pXhpXhhh
(φψ)-conformation:	aabappbb

Pattern:	[acilmv]	x	[adekqrst]	x	x	[dekpqrs]	x	x	[fgilvy]	[afiltv]
Conservation:	1.611	-0.590	1.054	-1.138	-1.030	0.521	-1.171	-0.419	0.361	0.800

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1dqw_A_112	1dqw	A	112	121	IAEWADITNA	HHHH-SEEEE	aaaaxabbbb
1ep3_A_149	1ep3	A	159	168	CKAVSKVPLY	HHHH-SS-EE	aaaaxabpbb
1g01_A_388	1g01	A	405	414	LREKGDNMIL	HHHH----EE	aaaabapxbb
1geq_A_177	1geq	A	186	195	AKRICRNKVA	HHHH-SS-EE	aaaaxaxxbb
1gkr_A_103	1gkr	A	113	122	AGQRLKVDFA	HHHH-SSEEE	aaaaxabxbb
1gox_*_213	1gox	-	219	228	LQTITSLPIL	HHHH--S-EE	aaaabaxxbb
1gte_A_688	1gte	A	698	707	VRQAVQIPFF	HHHH-SS-EE	aaaabaxwbb
1gup_A_124	1gup	A	141	150	LGKTYPWVQV	HHHH-SEEEE	aaaababbbx
1gvf_A_191	1gvf	A	197	206	IREVVDVPLV	HHHH--S-EE	aaaabaxpxb
1h5y_A_187	1h5y	A	193	202	VADSVRIPVI	HHHH-SS-EE	aaaabaxxbx
1h5y_A_62	1h5y	A	72	81	VAEAVSIPVL	HHHH-SS-EE	aaaabaxpbb
1h72_C_274	1h72	C	281	290	LRDYYENTIR	HHHH-S-EEE	aaaabaxbbb
1h7b_A_517	1h7b	A	527	536	AAQHLDYFGV	HHHH-SEEEE	aaaababbbb
1hg8_A_35	1hg8	A	38	47	AVSSCKNIVL	HHHH-SEEEE	aaaababbbx
1jvn_A_482	1jvn	A	488	497	VKDAVKIPVI	HHHH-SS-EE	aaaabaxpbx
1ka9_F_185	1ka9	F	191	200	VAEAVGVPVI	HHHH-SS-EE	aaaababxbb
1kbi_A_332	1kbi	A	338	347	LKKKTKLPIV	HHHH-SS-EE	aaaabaxpbb
1ldc_B_332	1ldc	B	338	347	LKKKTKLPIV	HHHT-SS-EE	aaaabapwbb
1mum_A_64	1mum	A	74	83	ITDVCSLPLL	HHHH--S-EE	aaaabaxwbx
1nqk_A_181	1nqk	A	187	196	AAEQVDLYLT	HHHH-SEEEE	aaaaxabxxb
1o0s_A_414	1o0s	A	420	429	MAEINERPII	HHHH-SS-EE	aaNababxxb
1oth_A_145	1oth	A	151	160	LAKEASIPII	HHHH-SS-EE	aaaaxabpbb
1oya_*_311	1oya	-	312	321	VYSIWKGPVI	HHHH--S-EE	aaaaxabwbx
1p0k_A_166	1p0k	A	173	182	ICSRVSVPVI	HHHH-SS-EE	aaaaxaxxbb
1p4c_A_214	1p4c	A	220	229	LRDLWPHKLL	HHHH--SEEE	aaaaxabxbb
1pbt_A_27	1pbt	A	28	37	LLEEKDKIFV	HHHH-S-EEE	aaaababbbb
1pii_*_293	1pii	-	299	308	VMAAAPLQYV	HHHH---EEE	aaaabaxbxb
1pii_*_99	1pii	-	103	112	VSQIAPQPIL	HHHH--S-EE	aaaabaxxbx
1ujp_A_76	1ujp	A	86	95	VRALTEKPLF	HHHH--S-EE	aaaabaxpbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ep3_A_149	1ep3	A	FMNFLAVIN MONONUCLEOTIDE	K - 170
1g01_A_388	1g01	A	CDCADMIUM ION	E - 396
1g01_A_388	1g01	A	CDCADMIUM ION	E - 403
1gox_*_213	1gox	*	FMNFLAVIN MONONUCLEOTIDE	K - 230
1gte_A_688	1gte	A	FMNFLAVIN MONONUCLEOTIDE	K - 709
1gte_A_688	1gte	A	IUR5-IODOURACIL	K - 709
1gup_A_124	1gup	A	GDUGALACTOSE-URIDINE-5'-DIPHOSPHATE	F - 151
1gup_A_124	1gup	A	GDUGALACTOSE-URIDINE-5'-DIPHOSPHATE	E - 152
1gup_A_124	1gup	A	GDUGALACTOSE-URIDINE-5'-DIPHOSPHATE	N - 153
1gvf_A_191	1gvf	A	EGLETHYLENE GLYCOL	Q - 192
1gvf_A_191	1gvf	A	EGLETHYLENE GLYCOL	R - 193
1gvf_A_191	1gvf	A	EGLETHYLENE GLYCOL	E - 196
1gvf_A_191	1gvf	A	PGCO-PHOSPHOGLYCOLOHYDROXAMATE	L - 207
1h5y_A_62	1h5y	A	PO4PHOSPHATE ION	G - 83
1h5y_A_62	1h5y	A	GOLGLYCEROL	G - 83
1h5y_A_187	1h5y	A	PO4PHOSPHATE ION	S - 204
1h5y_A_187	1h5y	A	GOLGLYCEROL	S - 204
1h72_C_274	1h72	C	TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	I - 289
1kbi_A_332	1kbi	A	MPD2-METHYL-2,4-PENTANEDIOL	K - 333
1kbi_A_332	1kbi	A	MPD2-METHYL-2,4-PENTANEDIOL	D - 334
1kbi_A_332	1kbi	A	MPD2-METHYL-2,4-PENTANEDIOL	I - 335
1kbi_A_332	1kbi	A	MPD2-METHYL-2,4-PENTANEDIOL	E - 337
1kbi_A_332	1kbi	A	MPD2-METHYL-2,4-PENTANEDIOL	L - 338
1kbi_A_332	1kbi	A	MPD2-METHYL-2,4-PENTANEDIOL	K - 341
1kbi_A_332	1kbi	A	FMNFLAVIN MONONUCLEOTIDE	K - 349
1mum_A_64	1mum	A	MGMAGNESIUM ION	D - 85
1oya_*_311	1oya	*	FMNFLAVIN MONONUCLEOTIDE	A - 323
1p4c_A_214	1p4c	A	FMNFLAVIN MONONUCLEOTIDE	K - 231
1pbt_A_27	1pbt	A	MSESELENOMETHIONINE	K - 27
1pbt_A_27	1pbt	A	MSESELENOMETHIONINE	L - 28
1pbt_A_27	1pbt	A	MSESELENOMETHIONINE	L - 29
1pbt_A_27	1pbt	A	MSESELENOMETHIONINE	E - 30
1pbt_A_27	1pbt	A	MSESELENOMETHIONINE	I - 35
1pbt_A_27	1pbt	A	MSESELENOMETHIONINE	V - 37
1pii_*_99	1pii	*	PO4PHOSPHATE ION	K - 114

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gte_A_688	1gte	A	MA1FMN BINDING SITE FOR CHAIN A	K - 709

Clusters included in this Subclass