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Information on SUBCLASS 5.1.2
Subclass Accession number: 9092
Subclass: 5.1.2 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 14

Average sequence ID (%) : 13.0 +/- 15.0
Average RMSD (Å) : 0.807 +/- 0.256

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXcpXhpXX
(φψ)-conformation: aalbpppaa
Pattern: x[acfklt]xxx[DGKNS][egkrst]x[ILPTV][DENPST]x[adeknr]x[afiklmv][adekrt]
Conservation:-0.849-0.279-0.567-0.865-0.8702.1040.378-0.6241.5441.775-0.690-0.247-0.169-0.557-0.084
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ak2_*_601ak2   -6781ATMDAGKLVSDEMVLHHHHTT----HHHHHaaaaavxxxxaaaaa
1axd_A_1191axd   A119133ISPMLGGTTDQKVVDHHHHHT----HHHHHaaaaagbbxxaaaaa
1brw_A_31brw   A822AKKRDGKALTKEEIEHHHHTT----HHHHHaaaaavxxxxaaaaa
1gnl_A_281gnl   A5064RLRAEGKAVDHRIDRHHHHTT----HHHHHaaaaavbxbxaaaaa
1gnw_A_1231gnw   A123137FKSIYGLTTDEAVVAHHHHTT----HHHHHaaaaavxxxxaaaaa
1h16_A_1161h16   A121135SCKAYNRELDPMIKKHHHHTT----HHHHHaaaaalbbxxaaaaa
1i5n_A_1001i5n   A103117DAYKNSEEPDAASFEHHHHTT----HHHHHaaaaalbxxxaaaaa
1knq_A_451knq   A4963EKMASGEPLNDDDRKHHHHTT----HHHHHaaaaavbxxbaaaaa
1ld8_B_6001ld8   B610624SLELLDEPIPQIVATHHHHTT----HHHHHaaaaalbxbwaaaaa
1ma1_A_361ma1   A5367EARESDTDVDIKAALHHHHTT----HHHHHaaaaalbxbxaaaaa
1nd7_A_6801nd7   A683697YKRMLSKKLTIKDLEHHHHTT----HHHHHaaaaavbxxbaaaaa
1o17_A_31o17   A822KKLINKSDLEINEAEHHHHTT----HHHHHaaaaalbxxxaaaaa
2ak3_A_492ak3   A5670TFIDQGKLIPDDVMTHHHHTT----HHHHHaaaaalbxxwaaaaa
2tpt_*_42tpt   -923RKKRDGHALSDEEIRHHHHTT----HHHHHaaaaavxxxxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gnw_A_1231gnw   A     GTXS-HEXYLGLUTATHIONE F - 123
1gnw_A_1231gnw   A     GTXS-HEXYLGLUTATHIONE I - 126
1gnw_A_1231gnw   A     GTXS-HEXYLGLUTATHIONE Y - 127
1gnw_A_1231gnw   A     GTXS-HEXYLGLUTATHIONE K - 142
1h16_A_1161h16   A     COACOENZYME A K - 116
1h16_A_1161h16   A     COACOENZYME A M - 117
1h16_A_1161h16   A     DTLD-TREITOL Y - 125
1i5n_A_1001i5n   A     MSESELENOMETHIONINE E - 100
1i5n_A_1001i5n   A     MSESELENOMETHIONINE Q - 101
1i5n_A_1001i5n   A     MSESELENOMETHIONINE L - 102
1i5n_A_1001i5n   A     MSESELENOMETHIONINE D - 103
1i5n_A_1001i5n   A     MSESELENOMETHIONINE L - 123
1i5n_A_1001i5n   A     MSESELENOMETHIONINE L - 126
1i5n_A_1001i5n   A     MSESELENOMETHIONINE A - 127
1i5n_A_1001i5n   A     MSESELENOMETHIONINE A - 130
1ld8_B_6001ld8   B     FPPFARNESYL DIPHOSPHATE W - 602
1ld8_B_6001ld8   B     U49(20S)-19,20,21,22-TETRAHYDRO-19-OXO-5H-18,20-ETHANO-12,14-ETHENO-6,10-METHENO-18H-BENZ[D]IMIDAZO[4,3-K][1, 6,9,12]OXATRIAZA-CYCLOOCTADECOSINE-9-CARBONITRILE W - 602
1ld8_B_6001ld8   B     U49(20S)-19,20,21,22-TETRAHYDRO-19-OXO-5H-18,20-ETHANO-12,14-ETHENO-6,10-METHENO-18H-BENZ[D]IMIDAZO[4,3-K][1, 6,9,12]OXATRIAZA-CYCLOOCTADECOSINE-9-CARBONITRILE W - 606
1ma1_A_361ma1   A     OF1FERROUS ION, 1 WATER COORDINATED H - 36
1ma1_A_361ma1   A     OF1FERROUS ION, 1 WATER COORDINATED Y - 40
1ma1_A_361ma1   A     OF1FERROUS ION, 1 WATER COORDINATED H - 80
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE F - 57
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE I - 58
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE G - 61
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE K - 62
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE L - 63
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE I - 64
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE P - 65
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE D - 66
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE M - 69
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h16_A_1161h16   A COACOA BINDING SITE FOR CHAIN AK - 116
1h16_A_1161h16   A COACOA BINDING SITE FOR CHAIN AM - 117
1h16_A_1161h16   A DT1DTL BINDING SITE FOR CHAIN AT - 138
1h16_A_1161h16   A DT1DTL BINDING SITE FOR CHAIN AE - 139

Clusters included in this Subclass
CLUSTER: HH.5.9
CLUSTER: HH.7.2