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PDB code:

Information on SUBCLASS 2.1.2

Subclass Accession number: 108 Subclass: 2.1.2 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates:

Number of loops: 54 Average sequence ID (%) : 15.5 +/- 16.0 Average RMSD (Å) : 0.613 +/- 0.223 Consensus geometry d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a8i_*_48	1a8i	-	73	82	HYYEKDPKRI	HHHHH---EE	aaaaalxpbb
1byr_A_40	1byr	A	48	57	AAKKRGVDVK	HHHHTT-EEE	aaaaagxxbb
1c0a_A_132	1c0a	A	151	159	FMDDHGFLD.	HHHHTT-EE.	aaaaavxxx.
1c0p_A_1139	1c0p	A	1149	1158	ELQKLGATFE	HHHHTT-EEE	aaaaavxbbb
1chu_A_260	1chu	A	261	270	ALRGEGAYLK	HHHHTT-EEE	aaaaagxbbb
1d3v_A_184	1d3v	A	189	198	IIKTLGIKYF	HHHHHT-EEE	aaaaavxxbb
1e5k_A_157	1e5k	A	160	169	FMRLAGGHAV	HHHHTT-EEE	aaaaavxbxb
1e5x_A_225	1e5x	A	226	235	QPIANGAFVL	HHHHTT-EEE	aaaaavxxxx
1eej_A_108	1eej	A	110	119	DYNALGITVR	HHHHTTEEEE	aaaaavbxbb
1euh_A_328	1euh	A	340	348	DANDKGATA.	HHHHTT-EE.	aaaaavxxx.
1f2d_A_117	1f2d	A	121	130	LSRIMGADVR	HHHHTT-EEE	aaaaalxxxb
1g41_A_272	1g41	A	283	292	LPLVEGSTVS	HHHHH--EEE	aaaaaSbbbx
1g6s_A_48	1g6s	A	56	65	ALTALGVSYT	HHHHTT-EEE	aaaaavxxbb
1gny_A_157	1gny	A	158	167	EFKASEANLQ	HHHHHT-EEE	aaaaavxbbb
1gq6_A_194	1gq6	A	195	204	YARGHGVRVV	HHHHTT-EEE	aaaaavxxxb
1h7w_A_238	1h7w	A	247	256	LMKDLGVKII	HHHTTT-EEE	aaaaavxbbb
1h7w_A_374	1h7w	A	379	388	LAKEEKCEFL	HHHHTT-EEE	aaaaavxxbb
1hc7_A_235	1hc7	A	236	245	FARAFDIKFQ	HHHHTT-EEE	aaaaalbbbx
1hc7_A_41	1hc7	A	57	65	MFKETGHQN.	HHHHTT-EE.	aaaaavxbx.
1i36_A_35	1i36	A	40	48	RARTVGVTE.	HHHHHT-EE.	aaaaavxxx.
1ii2_A_392	1ii2	A	402	411	KMQKHNSRVW	HHHHHT-EEE	aaaaalxxbb
1j0a_A_110	1j0a	A	114	123	LDKIMGIETR	HHHHTT-EEE	aaaaavxxbb
1j1y_A_4	1j1y	A	5	14	FMEALGLKVL	HHHHTT-EEE	aaaaavxbxa
1j7n_A_68	1j7n	A	73	82	MYKAIGGKIY	HHHHTT-EEE	aaaaavxbbb
1jv1_A_418	1jv1	A	432	440	WVLNAGGHF.	HHHHTT-EE.	aaaaavxbb.
1kw3_B_15	1kw3	B	22	31	LTKSVGLMAA	HHHTT--EEE	aaaaagxxxa
1ky8_A_342	1ky8	A	354	363	DAVEKGGRVL	HHHHTT-EEE	aaaaagxbxa
1l0l_B_82	1l0l	B	88	97	GIEAVGGKLS	HHHHTT-EEE	aaaaavxbbb
1lrz_A_130	1lrz	A	134	142	KMSNLGFEH.	HHHHTT-EE.	aaaaavxxx.
1lsh_B_1473	1lsh	B	1477	1486	IASKLEMEIM	HHHTTT-EEE	aaaaalbxbx
1m22_A_149	1m22	A	153	162	RLRDAGAVVL	HHHHTT-EEE	aaaaavxbxa
1mf7_A_256	1mf7	A	258	267	EADREGVIRY	HHHHTTEEEE	aaaaavxxbb
1mk4_A_113	1mk4	A	118	126	YHTKLGFDI.	HHHHTT-EE.	aaaaavxxb.
1mqi_A_35	1mqi	A	43	52	IAKHCGFKYK	HHHHHT--EE	ggaaavbxbb
1nmo_A_80	1nmo	A	85	94	TLLANDINLY	HHHHTT-EEE	aaaaalxxbb
1nnh_A_12	1nnh	A	28	37	FFVKEGFKWL	HHHHTT-EEE	aaaaavxxxx
1nx9_A_136	1nx9	A	137	146	VFVEGGYIRV	HHHHTT-EEE	aaaaavxxbb
1o04_A_347	1o04	A	359	368	TGKQEGAKLL	HHHHTT-EEE	aaaaavxxxa
1o9p_A_89	1o9p	A	93	102	MLKRAGATII	HHHHTT-EEE	aaaaavxbxa
1ono_A_107	1ono	A	112	121	AAIRAGKTIL	HHHHTT-EEE	aaaaalxxxx
1os1_A_418	1os1	A	428	437	RMQAAGAQAY	HHHHHT-EEE	aaaaavxbbb
1q9i_A_253	1q9i	A	264	273	NAVKRNIDLR	HHHHTT-EEE	aaaaalxxbb
1q9i_A_378	1q9i	A	379	388	AVRGNGAILV	HHHHTT-EEE	aaaaagxbbb
1qla_A_156	1qla	A	167	176	ECLKLGVSIQ	HHHHHT-EEE	aaaaavxxxb
1qo8_A_374	1qo8	A	374	383	TVRGVGAVMV	HHHHTT-EEE	aaaaaNxbbb
1rtq_A_156	1rtq	A	164	173	QYKSEGKNVV	HHHHTT-EEE	aaaaavxxxa
1sdo_A_57	1sdo	A	67	76	KLEAKGWKES	HHHHTT-EEE	aaaaavxbxb
1set_A_355	1set	A	356	365	QARRANLRYR	HHHHHT-EEE	aaaaavbbbb
1urs_A_178	1urs	A	184	193	IIGGYGGYVF	HHHHTT-EEE	aaaaavxbab
1uu1_A_157	1uu1	A	162	171	RILKTGAFVA	HHHHTT-EEE	aaaaavxxxx
1v7c_A_114	1v7c	A	119	128	QSLVHGARIV	HHHHTT-EEE	aaaaavxxbb
1v8c_A_98	1v8c	A	104	113	YLEEWGGTRE	HHHHTT-EEE	aaaaavxbxa
1ve9_A_141	1ve9	A	151	160	RLTERGVKFF	HHHTTT-EEE	aaaaavxxbb
3mbp_*_154	3mbp	-	160	169	LIAADGGYAF	HHHHTT-EEE	aaaaagxbab

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1d3v_A_184	1d3v	A	ABH2(S)-AMINO-6-BORONOHEXANOIC ACID	E - 186
1e5x_A_225	1e5x	A	MSESELENOMETHIONINE	V - 225
1e5x_A_225	1e5x	A	MSESELENOMETHIONINE	Q - 226
1e5x_A_225	1e5x	A	MSESELENOMETHIONINE	I - 228
1e5x_A_225	1e5x	A	MSESELENOMETHIONINE	A - 229
1e5x_A_225	1e5x	A	MSESELENOMETHIONINE	N - 230
1g6s_A_48	1g6s	A	GPJGLYPHOSATE	D - 49
1g6s_A_48	1g6s	A	FMTFORMIC ACID	L - 54
1g6s_A_48	1g6s	A	FMTFORMIC ACID	L - 57
1g6s_A_48	1g6s	A	FMTFORMIC ACID	T - 58
1g6s_A_48	1g6s	A	FMTFORMIC ACID	V - 62
1g6s_A_48	1g6s	A	FMTFORMIC ACID	S - 63
1g6s_A_48	1g6s	A	FMTFORMIC ACID	Y - 64
1g6s_A_48	1g6s	A	FMTFORMIC ACID	T - 65
1g6s_A_48	1g6s	A	FMTFORMIC ACID	L - 66
1gny_A_157	1gny	A	XYPBETA-D-XYLOPYRANOSE	Q - 167
1gny_A_157	1gny	A	XYPBETA-D-XYLOPYRANOSE	F - 169
1gny_A_157	1gny	A	XYPBETA-D-XYLOPYRANOSE	Q - 171
1h7w_A_374	1h7w	A	FADFLAVIN-ADENINE DINUCLEOTIDE	E - 376
1i36_A_35	1i36	A	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	P - 35
1i36_A_35	1i36	A	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	S - 36
1i36_A_35	1i36	A	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	T - 37
1i36_A_35	1i36	A	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	R - 40
1j1y_A_4	1j1y	A	MGMAGNESIUM ION	A - 8
1lsh_B_1473	1lsh	B	PLDDIUNDECYL PHOSPHATIDYL CHOLINE	A - 1474
1lsh_B_1473	1lsh	B	UPLUNKNOWN BRANCHED FRAGMENT OF PHOSPHOLIPID	A - 1474
1lsh_B_1473	1lsh	B	PLDDIUNDECYL PHOSPHATIDYL CHOLINE	I - 1477
1lsh_B_1473	1lsh	B	UPLUNKNOWN BRANCHED FRAGMENT OF PHOSPHOLIPID	I - 1477
1lsh_B_1473	1lsh	B	PLDDIUNDECYL PHOSPHATIDYL CHOLINE	A - 1478
1lsh_B_1473	1lsh	B	PLDDIUNDECYL PHOSPHATIDYL CHOLINE	L - 1481
1lsh_B_1473	1lsh	B	PLDDIUNDECYL PHOSPHATIDYL CHOLINE	M - 1483
1nmo_A_80	1nmo	A	MSESELENOMETHIONINE	R - 80
1nmo_A_80	1nmo	A	MSESELENOMETHIONINE	N - 81
1nmo_A_80	1nmo	A	MSESELENOMETHIONINE	R - 82
1nmo_A_80	1nmo	A	MSESELENOMETHIONINE	L - 83
1o04_A_347	1o04	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	Q - 349
1q9i_A_253	1q9i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 253
1q9i_A_253	1q9i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	G - 254
1q9i_A_378	1q9i	A	TEOMALATE LIKE INTERMEDIATE	E - 378
1q9i_A_378	1q9i	A	TEOMALATE LIKE INTERMEDIATE	A - 379
1q9i_A_378	1q9i	A	TEOMALATE LIKE INTERMEDIATE	R - 381
1qla_A_156	1qla	A	FADFLAVIN-ADENINE DINUCLEOTIDE	L - 161
1rtq_A_156	1rtq	A	ZNZINC ION	Q - 177
1urs_A_178	1urs	A	MLRMALTOTRIOSE	L - 178
1urs_A_178	1urs	A	MLRMALTOTRIOSE	Y - 179
1urs_A_178	1urs	A	MLRMALTOTRIOSE	F - 180
1uu1_A_157	1uu1	A	PMP4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE	D - 173
1v7c_A_114	1v7c	A	HEY(2E)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL] PYRIDIN-4-YL}METHYL)AMINO]-5-PHOSPHONOPENT-2-ENOIC ACID	K - 116
1ve9_A_141	1ve9	A	FADFLAVIN-ADENINE DINUCLEOTIDE	L - 145
3mbp_*_154	3mbp	*	GLCGLUCOSE	P - 154
3mbp_*_154	3mbp	*	GLCGLUCOSE	Y - 155
3mbp_*_154	3mbp	*	GLCGLUCOSE	F - 156

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1e5k_A_157	1e5k	A	CI1CITRIC ACID BINDING SITE FOR RESIDUE 302	M - 158
1gny_A_157	1gny	A	AC3XYP BINDING SITE FOR CHAIN A	Q - 171
1uu1_A_157	1uu1	A	AC1PMP BINDING SITE FOR CHAIN A	D - 173

Clusters included in this Subclass

CLUSTER: HE.2.8

CLUSTER: HE.3.6

CLUSTER: HE.3.65

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