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PDB code:

Information on SUBCLASS 3.1.2

Subclass Accession number: 184 Subclass: 3.1.2 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates:

Number of loops: 31 Average sequence ID (%) : 12.3 +/- 15.4 Average RMSD (Å) : 0.732 +/- 0.185 Consensus geometry d (Å): 11 delta (°): 90-135 theta (°): 90-135 rho (°): 180-225

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1avq_A_152	1avq	A	162	171	MWVTRKNAWY	HHHHT-SEEE	aaaavxabbx
1ax4_A_76	1ax4	A	86	95	KELFNYDYII	HHHH---EEE	aaaavxabbb
1bf2_*_211	1bf2	-	214	223	LASLGVTAVE	HHHHT--EEE	aaaagxabbb
1chu_A_290	1chu	A	301	310	MKRLGADCMF	HHHHT-S-EE	aaaavxabbb
1cnz_A_92	1cnz	A	99	108	RKHFKLFSNL	HHHHT--EEE	aaaalxabbb
1cvl_*_61	1cvl	-	73	82	LAATGATKVN	HHHH--S-EE	aaaavxabbb
1doz_A_235	1doz	A	243	252	FEQKGYQAFV	HHHH--SEEE	aaaavpabbb
1dp4_A_64	1dp4	A	73	82	KWEHSPAVFL	HHHH--SEEE	aaaalxabbb
1g5c_A_64	1g5c	A	74	83	IYALGDNEII	HHHH---EEE	aaaavxabbb
1h3g_A_154	1h3g	A	157	166	IAGLGFTQLW	HHHHT--EEE	aaaagxabbb
1hjr_A_40	1hjr	A	55	64	ITQFQPDYFA	HHHH--SEEE	aaaavxabbb
1j0h_A_182	1j0h	A	185	194	LVDLGITGIY	HHHHT--EEE	aaaagxabbb
1j0h_A_303	1j0h	A	317	326	IREFDIDGWR	HHHH---EEE	aaaavxabbx
1j3w_A_11	1j3w	A	24	33	LRETGARYAL	HHHH--SEEE	aaaavxabbb
1j5v_A_218	1j5v	A	229	238	TRKYNFKTVG	HHHH--SEEE	aaaalxabbb
1jf9_A_212	1jf9	A	212	221	VQALDCDFYV	HHHHT-SEEE	aaaavxabbb
1ji2_A_179	1ji2	A	182	191	LEELGVTALY	HHHHT-SEEE	aaaagxabbb
1jwi_B_47	1jwi	B	58	67	LEKMRIVLVW	HHTT---EEE	aaaalbabbx
1kcf_A_91	1kcf	A	106	115	HEKFNPHVIL	HHHH--SEEE	aaaalxabbb
1kzf_A_118	1kzf	A	130	139	AQNNAYGNIY	HHHTT-SEEE	aaaavbabbx
1m6y_A_85	1m6y	A	89	98	LKTLGIEKVD	HHHTT-S-EE	aaaavbabba
1nu0_A_42	1nu0	A	49	58	LKEWQPDEII	HHHH--S-EE	aaaalxabbb
1okk_D_235	1okk	D	244	253	HEAVGLTGVI	HHHH--SEEE	aaaavxabbb
1pvm_A_22	1pvm	A	29	38	MNENHLYGLV	HHHHT--EEE	aaaavbabbx
1q8i_A_201	1q8i	A	212	221	FANYDPDVII	HHHH--SEEE	aaaalxabbb
1qho_A_58	1qho	A	61	70	LKQLGVTTIW	HHHHT--EEE	aaaagxabxx
1qme_A_267	1qme	A	281	290	QEKVKGKYMT	HHHH--SEEE	aaaalxabbb
1qz9_A_213	1qz9	A	213	222	LHQAGADYAI	HHHHT-SEEE	aaaavpabbb
1s4n_A_260	1s4n	A	264	273	MQENEKVYGF	HHHTT--EEE	aaaalbabbb
2dkb_*_111	2dkb	-	123	132	KLVTGKYEIV	HHHHS--EEE	aaaavbaxbb
2gsa_A_123	2gsa	A	135	144	RAYTGRDKII	HHHH---EEE	aaaavbaxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1avq_A_152	1avq	A	PO4PHOSPHATE ION	Q - 157
1avq_A_152	1avq	A	PO4PHOSPHATE ION	S - 161
1cnz_A_92	1cnz	A	MNMANGANESE (II) ION	R - 109
1doz_A_235	1doz	A	MO6MAGNESIUM ION, 6 WATERS COORDINATED	Q - 236
1g5c_A_64	1g5c	A	ZNZINC ION	H - 87
1g5c_A_64	1g5c	A	EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID	H - 87
1h3g_A_154	1h3g	A	MSESELENOMETHIONINE	L - 154
1h3g_A_154	1h3g	A	MSESELENOMETHIONINE	D - 155
1h3g_A_154	1h3g	A	MSESELENOMETHIONINE	I - 157
1h3g_A_154	1h3g	A	MSESELENOMETHIONINE	A - 158
1h3g_A_154	1h3g	A	MSESELENOMETHIONINE	F - 162
1h3g_A_154	1h3g	A	CACALCIUM ION	F - 162
1h3g_A_154	1h3g	A	MSESELENOMETHIONINE	T - 163
1h3g_A_154	1h3g	A	CACALCIUM ION	T - 163
1h3g_A_154	1h3g	A	MSESELENOMETHIONINE	Q - 164
1h3g_A_154	1h3g	A	CACALCIUM ION	Q - 164
1h3g_A_154	1h3g	A	MSESELENOMETHIONINE	L - 165
1h3g_A_154	1h3g	A	CACALCIUM ION	L - 165
1h3g_A_154	1h3g	A	MSESELENOMETHIONINE	W - 166
1j5v_A_218	1j5v	A	MSESELENOMETHIONINE	R - 218
1j5v_A_218	1j5v	A	MSESELENOMETHIONINE	Y - 221
1j5v_A_218	1j5v	A	MSESELENOMETHIONINE	A - 222
1j5v_A_218	1j5v	A	MSESELENOMETHIONINE	A - 225
1j5v_A_218	1j5v	A	MSESELENOMETHIONINE	Y - 232
1j5v_A_218	1j5v	A	MSESELENOMETHIONINE	F - 234
1j5v_A_218	1j5v	A	MSESELENOMETHIONINE	V - 237
1j5v_A_218	1j5v	A	MSESELENOMETHIONINE	G - 238
1j5v_A_218	1j5v	A	MSESELENOMETHIONINE	I - 239
1jf9_A_212	1jf9	A	PLPPYRIDOXAL-5'-PHOSPHATE	S - 223
1m6y_A_85	1m6y	A	MSESELENOMETHIONINE	I - 100
1nu0_A_42	1nu0	A	MSESELENOMETHIONINE	I - 45
1nu0_A_42	1nu0	A	MSESELENOMETHIONINE	L - 48
1nu0_A_42	1nu0	A	MSESELENOMETHIONINE	L - 49
1nu0_A_42	1nu0	A	MSESELENOMETHIONINE	W - 52
1nu0_A_42	1nu0	A	MSESELENOMETHIONINE	Q - 53
1nu0_A_42	1nu0	A	MSESELENOMETHIONINE	P - 54
1nu0_A_42	1nu0	A	MSESELENOMETHIONINE	D - 55
1nu0_A_42	1nu0	A	MSESELENOMETHIONINE	E - 56
1nu0_A_42	1nu0	A	MSESELENOMETHIONINE	I - 57
1nu0_A_42	1nu0	A	MSESELENOMETHIONINE	I - 58
1nu0_A_42	1nu0	A	MSESELENOMETHIONINE	V - 59
1nu0_A_42	1nu0	A	MSESELENOMETHIONINE	L - 63
1okk_D_235	1okk	D	GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER	V - 254
1okk_D_235	1okk	D	GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER	T - 255
1qz9_A_213	1qz9	A	PLPPYRIDOXAL-5'-PHOSPHATE	G - 223
2dkb_*_111	2dkb	*	PLPPYRIDOXAL-5'-PHOSPHATE	G - 111
2dkb_*_111	2dkb	*	PLPPYRIDOXAL-5'-PHOSPHATE	A - 112
2dkb_*_111	2dkb	*	PLPPYRIDOXAL-5'-PHOSPHATE	E - 113
2dkb_*_111	2dkb	*	PLPPYRIDOXAL-5'-PHOSPHATE	S - 114
2dkb_*_111	2dkb	*	PLPPYRIDOXAL-5'-PHOSPHATE	N - 115
2gsa_A_123	2gsa	A	PMP4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE	G - 123
2gsa_A_123	2gsa	A	PMP4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE	T - 124
2gsa_A_123	2gsa	A	PMP4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE	E - 125
2gsa_A_123	2gsa	A	PLPPYRIDOXAL-5'-PHOSPHATE	E - 125
2gsa_A_123	2gsa	A	PMP4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE	C - 127

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1okk_D_235	1okk	D	M4DFTSY - GTPASE MOTIF IV	T - 255

Clusters included in this Subclass

CLUSTER: HE.3.49

CLUSTER: HE.4.9

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