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Information on SUBCLASS 1.1.6
Subclass Accession number: 8788
Subclass: 1.1.6 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 26

Average sequence ID (%) : 11.8 +/- 14.6
Average RMSD (Å) : 0.512 +/- 0.216

Consensus geometry
d (Å): 7 delta (°): 0-45 theta (°): 45-90 rho (°): 180-225
Consensus Sequence: XXpXX
(φψ)-conformation: aapaa
Pattern: xxxx[adegknqst][cdhnqrst][ekprst]x[fgilvwy]x
Conservation:-0.3490.338-1.274-0.6281.0561.1841.443-0.809-1.1980.238
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a2v_A_1241a2v   A126135EVIRNDPAVIHHHHT-HHHHaaaaaxaaaa
1bxb_A_2951bxb   A317326EAFREDPEVKHHHHT-HHHHaaaaaxaaaa
1dqa_A_5991dqa   A606615KAWLETSEGFHHHHTSHHHHaaaaaxaaaa
1dv1_B_4181dv1   B422431IRIMNDENFQHHHHT-HHHHaaaaaxaaaa
1eem_A_1971eem   A204213AAMKEDPTVSHHHHT-HHHHaaaaaxaaaa
1ezv_H_771ezv   H8392EHFKNTEEGKHHHHTSHHHHaaaaaxaaaa
1f0l_A_1141f0l   A115124MEQVGTEEFIHHHHTSHHHHaaaaaxaaaa
1f0l_A_2061f0l   A218227ESLKEHGPIKHHHHT-HHHHaaaaaxaaaa
1f3l_A_2251f3l   A228237EEMLKDKVRTHHHHT-HHHHaaaaaxaaaa
1fgj_A_2071fgj   A209218TANIETTVWAHHHHT-HHHHaaaaaxaaaa
1h0h_A_8651h0h   A865874LMTRNTPWLLHHHHTSHHHHaaaaabaaaa
1hna_*_1781hna   -185194SRFEGLEKISHHHHTSHHHHaaaaaxaaaa
1jfz_A_641jfz   A7180KAYLISEEFFHHHHTSHHHHaaaaapaaaa
1k28_A_3041k28   A309318KAGRDSLWYQHHHHSSHHHHaaaaabaaaa
1kiy_A_291kiy   A4453AHHFAQPRQQHHHHTSHHHHaaaaaxaaaa
1lc0_A_181lc0   A2433LRDLKDPRSAHHHHTSHHHHaaaaaxaaaa
1lox_*_4871lox   -488497EAVRDDLELQHHHHT-HHHHaaaaaxaaaa
1lpp_*_731lpp   -7988DLVMQSKVFEHHHHTSHHHHaaaaaxaaaa
1m0u_A_2221m0u   A229238DAVNALEPIKHHHHTSHHHHaaaaaxaaaa
1now_A_3591now   A359368KCWESNPKIQHHHHT-HHHHaaaaaxaaaa
1pmt_*_1761pmt   -183192ARIAQRPNVHHHHHTSHHHHaaaaapaaaa
1qdl_A_2501qdl   A258267LELMNSEKDKHHHHT-HHHHaaaaaxaaaa
1qgu_B_351qgu   B4251FAWTTTAEYEHHHHTSHHHHaaaaaxaaaa
1wht_B_2711wht   B276285TAYYNRRDVQHHHHT-HHHHaaaaaxaaaa
2gsq_*_1752gsq   -182191KRVAECPKIAHHHHTSHHHHaaaaaxaaaa
4lip_D_1604lip   D163172ALKTLTTAQAHHHHTSHHHHaaaaaxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1f3l_A_2251f3l   A     SAHS-ADENOSYL-L-HOMOCYSTEINE H - 227
1f3l_A_2251f3l   A     SAHS-ADENOSYL-L-HOMOCYSTEINE M - 230
1f3l_A_2251f3l   A     SAHS-ADENOSYL-L-HOMOCYSTEINE L - 231
1f3l_A_2251f3l   A     SAHS-ADENOSYL-L-HOMOCYSTEINE R - 236
1fgj_A_2071fgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 207
1fgj_A_2071fgj   A     HECHEME C D - 207
1fgj_A_2071fgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 210
1fgj_A_2071fgj   A     HECHEME C A - 210
1fgj_A_2071fgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 211
1fgj_A_2071fgj   A     HECHEME C N - 211
1fgj_A_2071fgj   A     HECHEME C I - 212
1fgj_A_2071fgj   A     HECHEME C T - 214
1fgj_A_2071fgj   A     HECHEME C V - 216
1fgj_A_2071fgj   A     HECHEME C W - 217
1h0h_A_8651h0h   A     2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER L - 865
1h0h_A_8651h0h   A     2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER M - 866
1kiy_A_291kiy   A     EDO1,2-ETHANEDIOL L - 55
1lc0_A_181lc0   A     PO4PHOSPHATE ION R - 18
1lc0_A_181lc0   A     PO4PHOSPHATE ION A - 19
1qgu_B_351qgu   B     MO6MAGNESIUM ION, 6 WATERS COORDINATED V - 38
1qgu_B_351qgu   B     EDO1,2-ETHANEDIOL E - 51
1qgu_B_351qgu   B     EDO1,2-ETHANEDIOL A - 52
1qgu_B_351qgu   B     EDO1,2-ETHANEDIOL N - 54
1wht_B_2711wht   B     BZSL-BENZYLSUCCINIC ACID E - 272
1wht_B_2711wht   B     NAGN-ACETYL-D-GLUCOSAMINE Y - 279
1wht_B_2711wht   B     NAGN-ACETYL-D-GLUCOSAMINE N - 280
1wht_B_2711wht   B     NAGN-ACETYL-D-GLUCOSAMINE R - 282
1wht_B_2711wht   B     NAGN-ACETYL-D-GLUCOSAMINE Q - 285
4lip_D_1604lip   D     CCPBUTYLPHOSPHONATE L - 167

Clusters included in this Subclass
CLUSTER: HH.3.7