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Information on SUBCLASS 0.1.1
Subclass Accession number: 1
Subclass: 0.1.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 29

Average sequence ID (%) : 6.6 +/- 10.8
Average RMSD (Å) : 0.521 +/- 0.132

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: XXXX
(φψ)-conformation: aabb
Pattern: xxxxxxxx
Conservation:1.148-0.6821.125-0.9060.811-0.328-1.169-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1auk_*_471auk   -5259LAAGGLRFHHHTSEEEaaaabxbx
1dfx_*_451dfx   -4552MEKHVPVIHHHHSEEEaaaaxxbb
1eaf_*_4161eaf   -428435SWLNVPHVHHHHS-EEaaaabxxb
1ed1_A_971ed1   A105111QRHLVVE.HHHH-EE.aaaabxb.
1elj_A_3201elj   A328334AVQHAYL.HHHT-EE.aaaaxxx.
1g61_A_20591g61   A20592065VGSLSVA.HHHH-EE.aaaabbb.
1hdh_A_301hdh   A3542LAIAGLRLHHHHSEEEaaaaxbxb
1ih7_A_7761ih7   A776783YISIASVSHHHH-EEEaaaaxxbb
1jat_A_1331jat   A144150TKLYAKK.HHHHSEE.aaaaxxx.
1jk7_A_2001jk7   A203209DLLWSDP.HHHH-EE.aaaaxbx.
1k0i_A_631k0i   A6572MARDGLVHHHHH-EEEaaaaxbxb
1kl1_A_91kl1   A2127RQHAKIE.HHHHSEE.aaaaxxx.
1kwm_A_941kwm   A99106LLNKLDFYHHHH-EEEaaaabbbx
1l5j_A_2481l5j   A254261LWFMGDDIHHHHSEEEaaaabbxb
1m4l_A_941m4l   A99106ILDSMDIFHHHH-EEEaaaabbbb
1mg7_A_2071mg7   A209216FNKKHDLVHHHHEEEEaaaabbxb
1n62_B_3011n62   B304311NLSTTSFAHHHHS-EEaaaabpxb
1nz0_A_131nz0   A2027IFKEGKSLHHHHSEEEaaaaxbbb
1o7f_A_491o7f   A5562ICLCGYYEHHHH-EEEaaaaxbbb
1obr_*_941obr   -99106LVNNREIYHHHH-EEEaaaabbxb
1oqj_A_1451oqj   A145151WKRAIRL.HHHHSEE.aaaaxbb.
1pot_*_3181pot   -320326TIKNGEW.HHHHSEE.aaaaxbx.
1rre_A_7491rre   A751758VIADLDIHHHHHSEEEaaaabxbb
1ug9_A_9581ug9   A960967IKEWRFGGHHHHSEEEaaaabxbv
1vjl_A_1311vjl   A134140VEKHSIE.HHHH-EE.aaaaxbx.
2dpm_A_1562dpm   A165172YINNNQLEHHHHSEEEaaaabbbb
2prg_A_3112prg   A330335LASLMN..HHHTEE..aaaabb..
3mbp_*_3153mbp   -323329NAQKGEI.HHHHSEE.aaaaxbx.
3pvi_A_1463pvi   A149155VMEHGTK.HHHHSEE.aaaaxbx.
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dfx_*_451dfx   *     FEFE (III) ION K - 47
1dfx_*_451dfx   *     FEFE (III) ION H - 48
1ed1_A_971ed1   A     IPAISOPROPYL ALCOHOL E - 98
1ed1_A_971ed1   A     IPAISOPROPYL ALCOHOL E - 99
1ed1_A_971ed1   A     IPAISOPROPYL ALCOHOL Q - 102
1jk7_A_2001jk7   A     OKAOKADAIC ACID C - 202
1jk7_A_2001jk7   A     MNMANGANESE (II) ION L - 205
1jk7_A_2001jk7   A     OKAOKADAIC ACID W - 206
1obr_*_941obr   *     CACALCIUM ION V - 100
1obr_*_941obr   *     CACALCIUM ION N - 101
1obr_*_941obr   *     CACALCIUM ION N - 102
1obr_*_941obr   *     CACALCIUM ION R - 103
1obr_*_941obr   *     CACALCIUM ION E - 104
1obr_*_941obr   *     CACALCIUM ION Y - 106
1ug9_A_9581ug9   A     CACALCIUM ION G - 968
1vjl_A_1311vjl   A     MSESELENOMETHIONINE D - 131
2prg_A_3112prg   A     BRL2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) H - 323
2prg_A_3112prg   A     BRL2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) I - 326
2prg_A_3112prg   A     BRL2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) Y - 327
2prg_A_3112prg   A     BRL2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) L - 330
2prg_A_3112prg   A     BRL2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) L - 333
2prg_A_3112prg   A     BRL2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) M - 334
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
2prg_A_3112prg   A CA1RESIDUES INVOLVED IN BINDING THE LXXLL COACTIVATOR HELIX.L - 311
2prg_A_3112prg   A CA1RESIDUES INVOLVED IN BINDING THE LXXLL COACTIVATOR HELIX.Q - 314
2prg_A_3112prg   A CA1RESIDUES INVOLVED IN BINDING THE LXXLL COACTIVATOR HELIX.V - 315
2prg_A_3112prg   A CA1RESIDUES INVOLVED IN BINDING THE LXXLL COACTIVATOR HELIX.L - 318
2prg_A_3112prg   A LB1THESE RESIDUES ARE INVOLVED IN LIGAND BINDING.H - 323
2prg_A_3112prg   A LB1THESE RESIDUES ARE INVOLVED IN LIGAND BINDING.Y - 327
2prg_A_3112prg   A LB1THESE RESIDUES ARE INVOLVED IN LIGAND BINDING.L - 330

Clusters included in this Subclass
CLUSTER: HE.0.0
CLUSTER: HE.1.4
CLUSTER: HE.2.12