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Information on SUBCLASS 4.3.1
Subclass Accession number: 1788
Subclass: 4.3.1 PSSM
Type: AR beta-beta link
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0004190 (>75 %)  GO:0005507 (>50 %)  
SCOP : 49502 (>50 %)  49503 (>50 %)  50629 (>50 %)  50630 (>50 %)  
 Number of loops: 32

Average sequence ID (%) : 10.7 +/- 14.9
Average RMSD (Å) : 0.694 +/- 0.273

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: XhXXpXXh
(φψ)-conformation: bbpaapbb
Pattern: xx[acfiklmtv]x[adenpqs][degknqrst]xx[afgilpvwy]x
Conservation:-1.000-1.1701.0430.2050.0891.676-0.368-1.219-0.256-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8d_*_421a8d   -4352VITYPDAQLVEEE-TT-EEEbbbxaaxxbb
1g97_A_2611g97   A261268.YIDIDVEI..EE-TT-EE..bbxaaxbb.
1ga8_A_991ga8   A100108LYLDIDVLV.EEE-SSEEE.bxbxaabbx.
1gxy_A_1661gxy   A169177IIKTCLGVY.EEEESS-EE.bbbbaaxbx.
1h80_A_1031h80   A105114IRVESDVIIKEEE-TT-EEExbbxaaxbbb
1ile_*_2401ile   -240249AAVHPEYTYAEEE-TTS-EEbbbxaaxbxx
1j2z_A_271j2z   A2734.VIGDGVKL..EE-TT-EE..bbxaaxbb.
1j2z_A_91j2z   A916.IISPKAEI..EE-TTSEE..bbpaaxbb.
1j58_A_2731j58   A273281.HWHPNTHEW.EE-SSS-EE.bbbaabxbb
1ji6_A_5221ji6   A522530.ALSSGASII.EE-TTEEEE.bbxaabbxb
1jj2_A_1451jj2   A146155KRLDPQCRATEEE-TT-EEEbxbxaaxxbb
1jj2_E_21jj2   E514LEIPEDVDAEEE--TT-EEEbxxxaabbbb
1jk3_A_1951jk3   A195204AHFDEDEFWTEEEETTS-EEbbbxaaxbxb
1juh_A_661juh   A6674.HIHQKHYEN.EE-SS-EEE.bbbaabxbb
1l6j_A_2021l6j   A202211AHFDDDELWSEEEETTS-EEbbbxaaxxxb
1ll2_A_971ll2   A99107VFMDADTLV.EEE-TTEEE.bxbpaabbx.
1nvm_B_2481nvm   B250259DVIPESAPLNEEE-TTS-EEbxbxaabxxx
1o7q_A_2201o7q   A222230FCMDVDQVF.EEE-SSEEE.bbbxaabbx.
1omz_A_1461omz   A148156LMVDDDTLI.EEE-TTEEE.bbbxaabbb.
1on3_A_4281on3   A429438VYAWPSAEIAEEE-TT-EEEbbbxaaxbxb
1pwb_A_3401pwb   A341350NDRACGEKRLEEE-TTSEEEbxbxaaxbbp
1pzt_A_2471pzt   A249257VFSDVDLIP.EEE-TTEEE.bxbxaabbx.
1qjv_A_2951qjv   A295302.SMDNHIYG..EE-TTEEE..xbxaaxae.
1qre_A_271qre   A2734.VIDPTAYI..EE-TT-EE..bbxaaxbb.
1qre_A_331qre   A3341.YIDPQASVI.EE-TT-EEE.bbpaaxbbb
1slm_*_1781slm   -178187AHFDDDEQWTEEEETTS-EEbbbxaaxxxb
1tyf_A_1111tyf   A111120RFCLPNSRVMEEE-TT-EEEbbbxaapbbb
1udz_A_2391udz   A240249AAVHPEYTYAEEE-TTSEEEbxbxaaxxbb
1un7_A_451un7   A4756IQAPADSVLLEE--TT-EEEbxxxaaxbxb
1v8c_A_481v8c   A4856.GLAERVSVF.EE-TT-EEE.xxxaaxbbb
1vio_A_401vio   A4048.QISQEDEIY.EE-TTS-EE.xbbaaxbbb
1vj0_A_1401vj0   A141150IVLDPETDVLEEE-TT--EEbbxxaapxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ga8_A_991ga8   A     MSESELENOMETHIONINE L - 100
1ga8_A_991ga8   A     UPFURIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUOROGALACTOSE Y - 101
1ga8_A_991ga8   A     UPFURIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUOROGALACTOSE L - 102
1ga8_A_991ga8   A     MNMANGANESE (II) ION D - 103
1ga8_A_991ga8   A     UPFURIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUOROGALACTOSE D - 103
1ga8_A_991ga8   A     MNMANGANESE (II) ION I - 104
1ga8_A_991ga8   A     UPFURIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUOROGALACTOSE I - 104
1ga8_A_991ga8   A     MNMANGANESE (II) ION D - 105
1ga8_A_991ga8   A     UPFURIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUOROGALACTOSE D - 105
1ga8_A_991ga8   A     MNMANGANESE (II) ION V - 106
1h80_A_1031h80   A     CACALCIUM ION E - 108
1h80_A_1031h80   A     CACALCIUM ION S - 109
1h80_A_1031h80   A     CACALCIUM ION D - 110
1j2z_A_91j2z   A     TARD(-)-TARTARIC ACID S - 11
1j2z_A_271j2z   A     TARD(-)-TARTARIC ACID I - 28
1j2z_A_271j2z   A     TARD(-)-TARTARIC ACID G - 29
1j2z_A_271j2z   A     TARD(-)-TARTARIC ACID D - 30
1j2z_A_271j2z   A     TARD(-)-TARTARIC ACID G - 31
1j58_A_2731j58   A     MSESELENOMETHIONINE H - 273
1j58_A_2731j58   A     MNMANGANESE (II) ION H - 273
1j58_A_2731j58   A     MSESELENOMETHIONINE W - 274
1j58_A_2731j58   A     MNMANGANESE (II) ION W - 274
1j58_A_2731j58   A     MSESELENOMETHIONINE H - 275
1j58_A_2731j58   A     MNMANGANESE (II) ION H - 275
1j58_A_2731j58   A     MSESELENOMETHIONINE E - 280
1j58_A_2731j58   A     MNMANGANESE (II) ION E - 280
1j58_A_2731j58   A     MSESELENOMETHIONINE Q - 282
1j58_A_2731j58   A     MNMANGANESE (II) ION Q - 282
1j58_A_2731j58   A     MSESELENOMETHIONINE Y - 284
1jk3_A_1951jk3   A     ZNZINC ION H - 196
1jk3_A_1951jk3   A     CACALCIUM ION D - 198
1jk3_A_1951jk3   A     CACALCIUM ION E - 199
1jk3_A_1951jk3   A     CACALCIUM ION D - 200
1jk3_A_1951jk3   A     CACALCIUM ION E - 201
1jk3_A_1951jk3   A     CACALCIUM ION F - 202
1jk3_A_1951jk3   A     CACALCIUM ION W - 203
1juh_A_661juh   A     CUCOPPER (II) ION H - 66
1juh_A_661juh   A     EDO1,2-ETHANEDIOL H - 66
1juh_A_661juh   A     NAGN-ACETYL-D-GLUCOSAMINE I - 67
1juh_A_661juh   A     CUCOPPER (II) ION I - 67
1juh_A_661juh   A     CUCOPPER (II) ION H - 68
1juh_A_661juh   A     EDO1,2-ETHANEDIOL H - 68
1juh_A_661juh   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 69
1juh_A_661juh   A     EDO1,2-ETHANEDIOL H - 71
1juh_A_661juh   A     EDO1,2-ETHANEDIOL Y - 72
1juh_A_661juh   A     CUCOPPER (II) ION E - 73
1juh_A_661juh   A     EDO1,2-ETHANEDIOL E - 73
1juh_A_661juh   A     CUCOPPER (II) ION F - 75
1juh_A_661juh   A     EDO1,2-ETHANEDIOL F - 75
1l6j_A_2021l6j   A     ZNZINC ION H - 203
1l6j_A_2021l6j   A     CACALCIUM ION D - 205
1l6j_A_2021l6j   A     CACALCIUM ION D - 206
1l6j_A_2021l6j   A     CACALCIUM ION D - 207
1l6j_A_2021l6j   A     CACALCIUM ION E - 208
1l6j_A_2021l6j   A     CACALCIUM ION L - 209
1l6j_A_2021l6j   A     CACALCIUM ION W - 210
1ll2_A_971ll2   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE F - 100
1ll2_A_971ll2   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE M - 101
1ll2_A_971ll2   A     MNMANGANESE (II) ION D - 102
1ll2_A_971ll2   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE D - 102
1ll2_A_971ll2   A     MNMANGANESE (II) ION A - 103
1ll2_A_971ll2   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE A - 103
1ll2_A_971ll2   A     MNMANGANESE (II) ION D - 104
1ll2_A_971ll2   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE D - 104
1ll2_A_971ll2   A     MNMANGANESE (II) ION T - 105
1ll2_A_971ll2   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE T - 105
1o7q_A_2201o7q   A     UDPURIDINE-5'-DIPHOSPHATE M - 224
1o7q_A_2201o7q   A     MNMANGANESE (II) ION D - 225
1o7q_A_2201o7q   A     GALD-GALACTOSE D - 225
1o7q_A_2201o7q   A     UDPURIDINE-5'-DIPHOSPHATE D - 225
1o7q_A_2201o7q   A     MNMANGANESE (II) ION V - 226
1o7q_A_2201o7q   A     UDPURIDINE-5'-DIPHOSPHATE V - 226
1o7q_A_2201o7q   A     MNMANGANESE (II) ION D - 227
1o7q_A_2201o7q   A     UDPURIDINE-5'-DIPHOSPHATE D - 227
1o7q_A_2201o7q   A     MNMANGANESE (II) ION Q - 228
1o7q_A_2201o7q   A     UDPURIDINE-5'-DIPHOSPHATE Q - 228
1o7q_A_2201o7q   A     GOLGLYCEROL V - 229
1omz_A_1461omz   A     UD2URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE V - 150
1omz_A_1461omz   A     MNMANGANESE (II) ION D - 151
1omz_A_1461omz   A     UD2URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE D - 151
1omz_A_1461omz   A     UD2URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE D - 152
1omz_A_1461omz   A     MNMANGANESE (II) ION D - 153
1omz_A_1461omz   A     UD2URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE D - 153
1omz_A_1461omz   A     MNMANGANESE (II) ION T - 154
1omz_A_1461omz   A     UD2URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE T - 154
1on3_A_4281on3   A     MCAMETHYLMALONYL-COENZYME A A - 438
1pwb_A_3401pwb   A     GLCGLUCOSE N - 341
1pwb_A_3401pwb   A     CACALCIUM ION N - 341
1pwb_A_3401pwb   A     GLCGLUCOSE D - 342
1pwb_A_3401pwb   A     CACALCIUM ION D - 342
1pwb_A_3401pwb   A     GLCGLUCOSE R - 343
1pwb_A_3401pwb   A     CACALCIUM ION R - 343
1slm_*_1781slm   *     ZNZINC ION H - 179
1slm_*_1781slm   *     CACALCIUM ION D - 181
1slm_*_1781slm   *     CACALCIUM ION D - 183
1slm_*_1781slm   *     CACALCIUM ION E - 184
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o7q_A_2201o7q   A AC3MN BINDING SITE FOR CHAIN AD - 225
1o7q_A_2201o7q   A AC3MN BINDING SITE FOR CHAIN AD - 227
1slm_*_1781slm   * ZN2ZN2 ARE THE LIGANDS OF THE STRUCTURAL (ZN 258) ZINC ION.H - 179
1slm_*_1781slm   * CA1CA1 ARE THE LIGANDS OF THE CALCIUM ION CA 259D - 181
1slm_*_1781slm   * CA1CA1 ARE THE LIGANDS OF THE CALCIUM ION CA 259E - 184

Clusters included in this Subclass
CLUSTER: AR.3.24
CLUSTER: AR.4.21
CLUSTER: AR.5.9