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Information on SUBCLASS 5.2.1
Subclass Accession number: 1871
Subclass: 5.2.1 PSSM
Type: AR beta-beta link
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 2.7 (>75 %)  2.7.1 (>75 %)  2.7.1.37
GO : GO:0004672 (>50 %)  GO:0005524 (>50 %)  GO:0008233 (>75 %)  GO:0016301 (>50 %)  GO:0016772 (>50 %)  GO:0016773 (>50 %)  
SCOP : 56111 (>75 %)  56112 (>75 %)  88854 (>75 %)  
 Number of loops: 19

Average sequence ID (%) : 9.9 +/- 13.5
Average RMSD (Å) : 0.705 +/- 0.366

Consensus geometry
d (Å): 13 delta (°): 0-45 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: XhXXppXXX
(φψ)-conformation: bbpaaapbb
Pattern: x[afilpv]xx[DEHKNRSTY][cdeknqsty][afiptv][hkpqrst]xx
Conservation:-0.8490.417-1.052-1.4931.564-0.3640.8390.3160.622-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b8p_A_1951b8p   A195203YADYRYAQI.EEE-SS-EE.bxbaaapbb.
1cwv_A_7811cwv   A781790LILSTLQKKIEE-GGG-EEEbbxaaapbxb
1ez4_A_1981ez4   A198206FAAYSTATI.EE-GGG-EE.bxxaaaxbb.
1f0l_A_4411f0l   A442451DVNKSKTHISEE-TTT-EEEbxxaaaxbbb
1g29_1_3501g29   1354363VFDMKKIHIFEE-GGG-EEEbbxaaaxbbb
1gv1_A_1781gv1   A179187VPVVKYTTV.EE-GGG-EE.bxxaaabbb.
1hye_A_1821hye   A183191VPLLSATSI.EE-GGG-EE.bxxaaabbb.
1hyh_A_2031hyh   A203211FVAWSTVRV.EE-TTT-EE.bxxaaaxbb.
1j83_A_11421j83   A11431151RVWTNNFVA.EE-GGG-EE.bbbaaaxbx.
1k8k_A_1841k8k   A184193YVIGSCIKHIEE-GGG-EEEbxxaaaxbbb
1lld_A_1851lld   A185193VPLWESATI.EE-TTS-EE.bxxaaaxbb.
1lug_A_441lug   A4857SVSYDQATSLEE-TT--EEEbbbaaaxbxa
1nko_A_1301nko   A132141WNYKYDQLSVEE-TTS-EEEbxxaaaxbxb
1o6z_A_1991o6z   A200208VPVFSKVSV.EE-GGG-EE.bxxaaaxbb.
1orv_A_2221orv   A227236QFNDTEVPLIEEE-TTS-EEbbbaaaxxbx
1qz5_A_1691qz5   A169178YALPHAIMRLEE-GGG-EEEbxbaaaxbbb
1roc_A_1351roc   A138147NILAEKPRVTEE-TTS-EEEbxxaaaxbxb
1t2d_A_1861t2d   A186194VLLKRYITV.EE-GGG-EE.xxxaaaxbb.
1v3e_A_2991v3e   A303311RFKNNNISF.EE-GGGSEE.xbxaaabxx.
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1f0l_A_4411f0l   A     APUADENYLYL-3'-5'-PHOSPHO-URIDINE-3'-MONOPHOSPHATE K - 445
1f0l_A_4411f0l   A     APUADENYLYL-3'-5'-PHOSPHO-URIDINE-3'-MONOPHOSPHATE S - 446
1g29_1_3501g29   1     MGMAGNESIUM ION K - 359
1orv_A_2221orv   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 227
1orv_A_2221orv   A     NAGN-ACETYL-D-GLUCOSAMINE N - 229
1orv_A_2221orv   A     NAGN-ACETYL-D-GLUCOSAMINE D - 230
1orv_A_2221orv   A     NAGN-ACETYL-D-GLUCOSAMINE T - 231
1orv_A_2221orv   A     NAGN-ACETYL-D-GLUCOSAMINE E - 232
1qz5_A_1691qz5   A     KABKABIRAMIDE C Y - 169
1qz5_A_1691qz5   A     KABKABIRAMIDE C A - 170
1qz5_A_1691qz5   A     HIC4-METHYL-HISTIDINE R - 177
1qz5_A_1691qz5   A     CACALCIUM ION R - 177
1v3e_A_2991v3e   A     NAGN-ACETYL-D-GLUCOSAMINE T - 302
1v3e_A_2991v3e   A     NAGN-ACETYL-D-GLUCOSAMINE R - 303
1v3e_A_2991v3e   A     NAGN-ACETYL-D-GLUCOSAMINE F - 304
1v3e_A_2991v3e   A     NAGN-ACETYL-D-GLUCOSAMINE K - 305
1v3e_A_2991v3e   A     NAGN-ACETYL-D-GLUCOSAMINE N - 307
1v3e_A_2991v3e   A     NAGN-ACETYL-D-GLUCOSAMINE N - 308
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1f0l_A_4411f0l   A CATREFERS TO CATALYTIC SITES - 446
1o6z_A_1991o6z   A AC1CL BINDING SITE FOR CHAIN AK - 205

Clusters included in this Subclass
CLUSTER: AR.4.17
CLUSTER: AR.5.12
CLUSTER: AR.6.30