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PDB code:

Information on SUBCLASS 3.3.3

Subclass Accession number: 3780 Subclass: 3.3.3 Type: AR beta-beta link DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 25 Average sequence ID (%) : 15.3 +/- 17.9 Average RMSD (Å) : 0.472 +/- 0.110 Consensus geometry d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 135-180

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ciy_*_480	1ciy	-	480	488	.NLGSGTSVV	.EE-TT-EEE	.bxxxgxbxb
1czf_A_54	1czf	A	54	62	.EVPAGTTLD	.EE-TT--EE	.bxppvbxxx
1e2w_A_70	1e2w	A	75	83	LILPEGFEL.	EE--TT-EE.	bbxxpgxbx.
1eyq_A_143	1eyq	A	143	151	.NFPPGASVF	.EE-TT-EEE	.bbxpgxbbb
1g97_A_336	1g97	A	336	344	.SLGAQVHIG	.EE-TT-EEE	.bbxpvxbbx
1gtt_A_45	1gtt	A	45	53	.VIGCGEPIP	.EE-TT--EE	.xbxpvxxxx
1h2k_A_186	1h2k	A	188	197	LIGMEGNVTP	EEE-TT-EEE	bbbxpvxbbx
1hg8_A_51	1hg8	A	51	59	.QVPTGKQLD	.EE-TT--EE	.xxppvbxxx
1i5z_A_19	1i5z	A	21	30	HKYPSKSTLI	EEE-TT-EEE	bbbxpvxxab
1ia5_A_31	1ia5	A	31	39	.AVPSGTTLD	.EE-TT--EE	.bxppvbxxx
1ijq_A_487	1ijq	A	490	499	LFRENGSKPR	EEE-TT--EE	abbbxvxbxa
1jpc_*_8	1jpc	-	8	17	ETLSTGEFLN	EEE-TT-EEE	bbbxpvxbbb
1k5c_A_25	1k5c	A	25	34	FTVPAGNTLV	EEE-TT--EE	bxxxpvbbbb
1lur_A_1311	1lur	A	1311	1319	.SLRPGDHYC	.EE-TT--EE	.xbbpgxbxb
1ly2_A_88	1ly2	A	88	95	..YRHGDSVT	..EETT-EEE	..xxpvxbbb
1nhc_A_59	1nhc	A	59	67	.EVPAGETLD	.EE-TT--EE	.xxxpvbxxx
1npl_A_9	1npl	A	9	17	.TLSPGEFLN	.EE-TT-EEE	.bbxpvxbbb
1ok3_A_23	1ok3	A	23	30	..FPEDTVIT	..EETT-EEE	..bxpvxbbb
1qre_A_114	1qre	A	114	122	.SLAHQSQVH	.EE-TT-EEE	.bbxpvxbbb
1qre_A_132	1qre	A	132	140	.FIGMQAFVF	.EE-TT-EEE	.xbxpvxbbb
1qre_A_149	1qre	A	149	157	.VLEPRSAAI	.EE-TT-EEE	.bbxpvxbbb
1ry2_A_496	1ry2	A	496	504	.FPFFGIDAV	.EE-TT--EE	.bpxxvxbxb
1snz_A_324	1snz	A	324	332	.LLRPGEEYD	.EE-TTS-EE	.xbbpgxbxb
1uyr_A_1985	1uyr	A	1987	1996	IYIPPTGELR	EEE-TT-EEE	bbxwxvxbbb
1uzp_A_1628	1uzp	A	1631	1640	CRCPTGYYLN	EE--TT--EE	bbxxpvbbxx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1e2w_A_70	1e2w	A	HECHEME C	N - 70
1e2w_A_70	1e2w	A	HECHEME C	V - 71
1e2w_A_70	1e2w	A	HECHEME C	G - 72
1e2w_A_70	1e2w	A	HECHEME C	M - 73
1e2w_A_70	1e2w	A	HECHEME C	V - 74
1eyq_A_143	1eyq	A	NARNARINGENIN	Y - 152
1h2k_A_186	1h2k	A	OGAN-OXALYOLGLYCINE	L - 186
1h2k_A_186	1h2k	A	OGAN-OXALYOLGLYCINE	L - 188
1h2k_A_186	1h2k	A	OGAN-OXALYOLGLYCINE	V - 195
1h2k_A_186	1h2k	A	FE2FE (II) ION	T - 196
1h2k_A_186	1h2k	A	OGAN-OXALYOLGLYCINE	T - 196
1h2k_A_186	1h2k	A	FE2FE (II) ION	H - 199
1h2k_A_186	1h2k	A	OGAN-OXALYOLGLYCINE	H - 199
1i5z_A_19	1i5z	A	CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE	I - 30
1ia5_A_31	1ia5	A	MANALPHA-D-MANNOSE	P - 33
1ia5_A_31	1ia5	A	MANALPHA-D-MANNOSE	S - 34
1ia5_A_31	1ia5	A	MANALPHA-D-MANNOSE	G - 35
1ia5_A_31	1ia5	A	MANALPHA-D-MANNOSE	T - 36
1ia5_A_31	1ia5	A	MANALPHA-D-MANNOSE	T - 37
1ia5_A_31	1ia5	A	MANALPHA-D-MANNOSE	D - 39
1nhc_A_59	1nhc	A	MANALPHA-D-MANNOSE	E - 64
1nhc_A_59	1nhc	A	MANALPHA-D-MANNOSE	T - 65
1nhc_A_59	1nhc	A	MANALPHA-D-MANNOSE	D - 67
1qre_A_114	1qre	A	OCNCOBALT ION, 2 WATERS COORDINATED	Q - 120
1qre_A_114	1qre	A	BCTBICARBONATE ION	H - 122
1qre_A_114	1qre	A	OCNCOBALT ION, 2 WATERS COORDINATED	H - 122
1qre_A_114	1qre	A	OCNCOBALT ION, 2 WATERS COORDINATED	G - 123
1uyr_A_1985	1uyr	A	D1L2-[4-(2,4-DICHLOROPHENOXY)PHENOXY]PROPANOIC ACID	R - 1996
1uzp_A_1628	1uzp	A	SMSAMARIUM (III) ION	S - 1628
1uzp_A_1628	1uzp	A	SMSAMARIUM (III) ION	F - 1629

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1e2w_A_70	1e2w	A	AC1HEC BINDING SITE FOR CHAIN A	N - 70
1e2w_A_70	1e2w	A	AC1HEC BINDING SITE FOR CHAIN A	G - 72
1h2k_A_186	1h2k	A	SO2SO4 BINDING SITE FOR CHAIN A	E - 192
1h2k_A_186	1h2k	A	SO2SO4 BINDING SITE FOR CHAIN A	G - 193
1h2k_A_186	1h2k	A	FE1FE BINDING SITE FOR CHAIN A	H - 199
1uzp_A_1628	1uzp	A	AC2SM BINDING SITE FOR CHAIN A	S - 1628

Clusters included in this Subclass

CLUSTER: AR.4.243

CLUSTER: AR.4.62

CLUSTER: AR.5.21

CLUSTER: AR.6.25

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