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Information on SUBCLASS 2.1.3
Subclass Accession number: 468
Subclass: 2.1.3 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 56

Average sequence ID (%) : 9.8 +/- 13.2
Average RMSD (Å) : 0.368 +/- 0.185

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XXXcXX
(φψ)-conformation: bblgbb
Pattern: xxxx[degknrst]xxx
Conservation:-0.216-0.333-0.5750.0662.421-0.589-0.389-0.385
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a3k_*_1701a3k   -175181TKLDNNW.EEETTEE.bbblvbx.
1a7t_A_331a7t   A4249VINNHQAAEEETTEEEbbblvbbb
1ac5_*_4301ac5   -433440KYDRNLTFEEETTEEEbbblvbbb
1acf_*_601acf   -6067FDLAGVHYEEETTEEEbbblvbxb
1aui_A_3191aui   A323330KYENNVMNEEETTEEEbxblvbbx
1b6a_*_2481b6a   -254261THISGRIIEEETTEEEbbblvxxb
1bdo_*_1141bdo   -118125VEAMKMMNEEETTEEEbbblvxbx
1beb_A_811beb   A8491IDALNENKEEETTEEEbbblvbab
1bg2_*_1261bg2   -136143EIYLDKIREEETTEEEbbbllbxb
1cb8_A_4451cb8   A451458LDYDSLQAEEETTEEExbbllbbb
1cjx_A_2941cjx   A298305SSVEGDKREEETTEEEbbblgxbb
1d2o_A_6091d2o   A612619DINGTTITEEETTEEEbbblgxbb
1ekm_A_2581ekm   A259266MEWSNFKFEEETTEEEbbblvxbb
1euv_A_4261euv   A428435MNRDNIEIEEETTEEEbbblvbbb
1ex2_A_651ex2   A7380VCLDGECLEEETTEEEbbblgxbx
1f3l_A_5121f3l   A516523LTLNSSTQEEETTEEEbbbllbbb
1f8r_A_1201f8r   A121128YFIKNIRKEEETTEEEbbblvbbb
1f9v_A_5121f9v   A521528EIYNENIVEEETTEEEbbblvbxb
1fqt_A_171fqt   A2027VESGGTSVEEETTEEEbbblvbbb
1g0u_C_2101g0u   C215222VKPDSDIVEETTTEEEbbpllxbb
1g1k_A_651g1k   A6976SASNGTISEEETTEEEbbblgbbb
1g3k_A_31g3k   A613VRRNGQVVEEETTEEEbbblvbbb
1gxq_A_1321gxq   A132139IEMQGLSLEEETTEEExbblvxbb
1gz6_A_2361gz6   A238245EVGAGWIGEEETTEEEbbbUgbbb
1gz8_A_661gz8   A7077IHTENKLYEEETTEEEbbblvbbb
1gzw_A_401gzw   A4956FNAHGDANEEETTEEEabblvxbl
1hdh_A_4571hdh   A460467WELFGMRAEEETTEEEbbblvxbb
1hsk_A_1531hsk   A153158.GAYGGE..EETTEE..bblvbb.
1hzp_A_2981hzp   A304311YGAGLSYAEETTTEEEbepgvbbb
1i7d_A_291i7d   A3138ECGNGQVVEETTTEEExbxvlbbb
1ih7_A_7071ih7   A713720WDMEGTRYEEETTEEEabblgxxx
1ivw_A_2371ivw   A238245IEWEKWSLEEETTEEEbbblvxbb
1j1t_A_1481j1t   A154161VNNYGDVEEEETTEEEbbxlgbxb
1j1t_A_1591j1t   A162169VTAFGNSFEEETTEEEbbblvbbb
1j20_A_3351j20   A340347KLYKGNVYEEETTEEEbbblgbbb
1jgt_A_4161jgt   A416422KRRHGRD.HEETTEE.abblvbx.
1l3l_A_381l3l   A4148HIQHRHITEEETTEEEbbblgxbb
1ln1_A_311ln1   A3441VETSGISIEEETTEEEbbblvbbb
1n9e_A_3411n9e   A342349FSWMDWGFEEETTEEEbbblvxbb
1n9e_A_4511n9e   A453460HTGASYSAEEETTEEEbbblvbbb
1nd4_A_801nd4   A8491VTEAGRDWEE-SS-EEbbblvbxb
1nep_A_521nep   A5764GIVMGIPVEEETTEEEbxblvbwb
1ng4_A_2391ng4   A240247LYHDHCYIEEETTEEExbblvbbb
1nkr_*_541nkr   -5461EHHDGVSKEEETTEEExxblvbbb
1nqe_A_1371nqe   A144151WGSNSYQNEETTTEEEbbxgvxbb
1p42_A_1361p42   A138145VEDEGRLIEEETTEEEbbblvxbb
1pgu_A_1791pgu   A179186VGDDGSVVEETTTEEEbbxllbbb
1pp7_U_931pp7   U97104HDKGGWTQEEETTEEExxblvxbb
1ry6_A_1371ry6   A145152EIYCGKLYEEETTEEEbbblvbbb
1uas_A_2791uas   A282289QSDNGLEVEEETTEEEbbblvxbb
1uqt_A_2101uqt   A211218HTAWGKAFEEETTEEEbbblvbxb
1uuh_A_291uuh   A2935.RFAGVFH.EETTEEE.xblvxbb
2hft_*_102hft   -1522KSTNFKTIEEETTEEEbbblvxbb
2uag_A_3042uag   A307314LEHNGVRWEEETTEEEbbblvbbb
3tss_*_183tss   -2734DNSLGSMREEETTEEEbbblvbbb
7ahl_A_1747ahl   A174181MVNQNWGPEEETTEEEbxblvbew
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a3k_*_1701a3k   *     GALD-GALACTOSE V - 172
1a3k_*_1701a3k   *     NAGN-ACETYL-D-GLUCOSAMINE V - 172
1a3k_*_1701a3k   *     GALD-GALACTOSE C - 173
1a3k_*_1701a3k   *     GALD-GALACTOSE N - 174
1a3k_*_1701a3k   *     GALD-GALACTOSE W - 181
1a3k_*_1701a3k   *     NAGN-ACETYL-D-GLUCOSAMINE W - 181
1a7t_A_331a7t   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID V - 35
1a7t_A_331a7t   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID S - 37
1a7t_A_331a7t   A     ZNZINC ION S - 37
1ac5_*_4301ac5   *     NAGN-ACETYL-D-GLUCOSAMINE Y - 434
1ac5_*_4301ac5   *     NAGN-ACETYL-D-GLUCOSAMINE D - 435
1ac5_*_4301ac5   *     NAGN-ACETYL-D-GLUCOSAMINE R - 436
1ac5_*_4301ac5   *     NAGN-ACETYL-D-GLUCOSAMINE N - 437
1b6a_*_2481b6a   *     TNP3,5,6,8-TETRAMETHYL-N-METHYL PHENANTHROLINIUM D - 251
1b6a_*_2481b6a   *     COCOBALT (II) ION D - 251
1b6a_*_2481b6a   *     COCOBALT (II) ION F - 252
1b6a_*_2481b6a   *     TNP3,5,6,8-TETRAMETHYL-N-METHYL PHENANTHROLINIUM D - 262
1b6a_*_2481b6a   *     COCOBALT (II) ION D - 262
1b6a_*_2481b6a   *     COCOBALT (II) ION C - 263
1b6a_*_2481b6a   *     COCOBALT (II) ION A - 264
1bdo_*_1141bdo   *     BTNBIOTIN I - 117
1bdo_*_1141bdo   *     BTNBIOTIN E - 119
1bdo_*_1141bdo   *     BTNBIOTIN K - 122
1bdo_*_1141bdo   *     BTNBIOTIN M - 124
1bg2_*_1261bg2   *     ACTACETATE ION Y - 134
1bg2_*_1261bg2   *     ACTACETATE ION E - 136
1bg2_*_1261bg2   *     ACTACETATE ION Y - 138
1bg2_*_1261bg2   *     ACTACETATE ION R - 143
1cb8_A_4451cb8   A     MANALPHA-D-MANNOSE D - 454
1cb8_A_4451cb8   A     GCUD-GLUCURONIC ACID D - 454
1cb8_A_4451cb8   A     MANALPHA-D-MANNOSE S - 455
1cb8_A_4451cb8   A     RAMRHAMNOSE S - 455
1cb8_A_4451cb8   A     GCUD-GLUCURONIC ACID S - 455
1cb8_A_4451cb8   A     MANALPHA-D-MANNOSE L - 456
1cjx_A_2941cjx   A     FE2FE (II) ION Q - 309
1cjx_A_2941cjx   A     ACTACETATE ION Q - 309
1cjx_A_2941cjx   A     FE2FE (II) ION F - 311
1cjx_A_2941cjx   A     ACTACETATE ION F - 311
1ex2_A_651ex2   A     PO4PHOSPHATE ION G - 68
1ex2_A_651ex2   A     PO4PHOSPHATE ION A - 69
1ex2_A_651ex2   A     PO4PHOSPHATE ION D - 70
1gz6_A_2361gz6   A     MSESELENOMETHIONINE V - 239
1gz6_A_2361gz6   A     MSESELENOMETHIONINE A - 241
1gz6_A_2361gz6   A     MSESELENOMETHIONINE G - 242
1gz6_A_2361gz6   A     MSESELENOMETHIONINE W - 243
1gz6_A_2361gz6   A     MSESELENOMETHIONINE I - 244
1gz8_A_661gz8   A     MBP1-[(2-AMINO-6,9-DIHYDRO-1H-PURIN-6-YL)OXY]-3-METHYL-2-BUTANOL F - 80
1gz8_A_661gz8   A     MBP1-[(2-AMINO-6,9-DIHYDRO-1H-PURIN-6-YL)OXY]-3-METHYL-2-BUTANOL E - 81
1gzw_A_401gzw   A     GALD-GALACTOSE H - 44
1gzw_A_401gzw   A     GALD-GALACTOSE N - 46
1gzw_A_401gzw   A     GALD-GALACTOSE R - 48
1gzw_A_401gzw   A     BGCBETA-D-GLUCOSE R - 48
1gzw_A_401gzw   A     GALD-GALACTOSE H - 52
1gzw_A_401gzw   A     BGCBETA-D-GLUCOSE H - 52
1gzw_A_401gzw   A     BGCBETA-D-GLUCOSE D - 54
1gzw_A_401gzw   A     GALD-GALACTOSE V - 59
1gzw_A_401gzw   A     BGCBETA-D-GLUCOSE V - 59
1gzw_A_401gzw   A     GALD-GALACTOSE C - 60
1gzw_A_401gzw   A     GALD-GALACTOSE N - 61
1hsk_A_1531hsk   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 153
1hsk_A_1531hsk   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 154
1hsk_A_1531hsk   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 155
1hzp_A_2981hzp   A     DAOLAURIC ACID Y - 304
1hzp_A_2981hzp   A     DAOLAURIC ACID G - 305
1hzp_A_2981hzp   A     DAOLAURIC ACID A - 306
1jgt_A_4161jgt   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER D - 422
1l3l_A_381l3l   A     MSESELENOMETHIONINE A - 38
1l3l_A_381l3l   A     LAE3-OXO-OCTANOIC ACID (2-OXO-TETRAHYDRO-FURAN-3-YL)-AMIDE A - 38
1l3l_A_381l3l   A     MSESELENOMETHIONINE Y - 39
1l3l_A_381l3l   A     LAE3-OXO-OCTANOIC ACID (2-OXO-TETRAHYDRO-FURAN-3-YL)-AMIDE Y - 39
1l3l_A_381l3l   A     MSESELENOMETHIONINE L - 40
1l3l_A_381l3l   A     LAE3-OXO-OCTANOIC ACID (2-OXO-TETRAHYDRO-FURAN-3-YL)-AMIDE L - 40
1l3l_A_381l3l   A     MSESELENOMETHIONINE H - 41
1l3l_A_381l3l   A     MSESELENOMETHIONINE I - 42
1l3l_A_381l3l   A     MSESELENOMETHIONINE Q - 43
1l3l_A_381l3l   A     LAE3-OXO-OCTANOIC ACID (2-OXO-TETRAHYDRO-FURAN-3-YL)-AMIDE A - 49
1l3l_A_381l3l   A     LAE3-OXO-OCTANOIC ACID (2-OXO-TETRAHYDRO-FURAN-3-YL)-AMIDE T - 51
1ln1_A_311ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE L - 33
1ln1_A_311ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE V - 34
1ln1_A_311ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE I - 39
1ln1_A_311ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE I - 41
1n9e_A_4511n9e   A     TPQ5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE H - 453
1n9e_A_4511n9e   A     CACALCIUM ION H - 453
1nd4_A_801nd4   A     ACTACETATE ION G - 95
1nep_A_521nep   A     PO4PHOSPHATE ION H - 56
1ng4_A_2391ng4   A     PEOHYDROGEN PEROXIDE H - 244
1ng4_A_2391ng4   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 246
1ng4_A_2391ng4   A     PEOHYDROGEN PEROXIDE Y - 246
1pgu_A_1791pgu   A     MSESELENOMETHIONINE V - 179
1pgu_A_1791pgu   A     MSESELENOMETHIONINE V - 185
1pgu_A_1791pgu   A     MSESELENOMETHIONINE V - 186
1pgu_A_1791pgu   A     MSESELENOMETHIONINE F - 187
1pgu_A_1791pgu   A     MSESELENOMETHIONINE Y - 188
1pgu_A_1791pgu   A     MSESELENOMETHIONINE Q - 189
1uas_A_2791uas   A     GOLGLYCEROL G - 286
1uas_A_2791uas   A     GOLGLYCEROL E - 288
1uuh_A_291uuh   A     MSESELENOMETHIONINE V - 33
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gz8_A_661gz8   A MBPMBP BINDING SITE FOR CHAIN AF - 80
1gzw_A_401gzw   A BGABGC BINDING SITE FOR CHAIN AR - 48

Clusters included in this Subclass
CLUSTER: HA.1.52
CLUSTER: HA.1.8
CLUSTER: HA.2.10
CLUSTER: HA.2.84
CLUSTER: HA.3.16