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Information on SUBCLASS 2.3.8
Subclass Accession number: 6109
Subclass: 2.3.8 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 18

Average sequence ID (%) : 14.8 +/- 17.6
Average RMSD (Å) : 0.339 +/- 0.109

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXcpXX
(φψ)-conformation: bbeabb
Pattern: x[aekqrs]x[dgn][DEHNRS]xx
Conservation:-0.731-0.081-0.6591.7671.019-0.643-0.671
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aoe_A_1771aoe   A177183IKEGDFTEEETTEExbbeaxb
1c8n_C_811c8n   C8389GMRGNSTEEETTEEbbbeaxb
1cf2_O_2861cf2   O286292TVVDNEIEEETTEEbbbeabb
1efc_A_2511efc   A258264VEMFRKLEEETTEEbbbeaxx
1egd_A_1501egd   A152158EKKGDEYEE-SSEEbxbeabb
1f60_A_2831f60   A290296VEMHHEQEEETTEEbbbeaxx
1i1q_A_501i1q   A6268TALGDTVEEETTEEbbbeabb
1i2k_A_2411i2k   A245251CACGDVSEEETTEEabbeaxb
1k9v_F_4611k9v   F467473VRKGRILEEETTEEbbbeaxb
1o91_A_6581o91   A677683LFKNNEPEEETTEExbbeabx
1pwb_A_2371pwb   A238244QSVGEKIEEETTEEbbbeaxb
1r53_A_1501r53   A156162TQIGEIKEEETTEEabbeaxb
1rqp_A_1961rqp   A196202EQDGEALEEETTEEbxbeaxb
1sgv_A_1941sgv   A202208TRVGRFEEEETTEEabbeabb
1umr_C_2091umr   C209215SSYDRYCEEETTEEbbbeabb
1uv0_A_191uv0   A1925KAYGSHCEEETTEEbxbeabb
1vio_A_1971vio   A203209WKIGDVVEEETTEEabbeaxx
3cla_*_1793cla   -179185QQEGDRLEEETTEEbxbeabb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1egd_A_1501egd   A     FADFLAVIN-ADENINE DINUCLEOTIDE M - 165
1egd_A_1501egd   A     FADFLAVIN-ADENINE DINUCLEOTIDE W - 166
1egd_A_1501egd   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 167
1egd_A_1501egd   A     FADFLAVIN-ADENINE DINUCLEOTIDE T - 168
1i1q_A_501i1q   A     TRPTRYPTOPHAN K - 50
1i1q_A_501i1q   A     TRPTRYPTOPHAN S - 51
1i1q_A_501i1q   A     TRPTRYPTOPHAN L - 52
1rqp_A_1961rqp   A     SAMS-ADENOSYLMETHIONINE D - 210
1uv0_A_191uv0   A     ZNZINC ION H - 24
1vio_A_1971vio   A     BU11,4-BUTANEDIOL V - 197
1vio_A_1971vio   A     BU11,4-BUTANEDIOL V - 198
1vio_A_1971vio   A     BU11,4-BUTANEDIOL G - 199
1vio_A_1971vio   A     BU11,4-BUTANEDIOL L - 200
1vio_A_1971vio   A     BU11,4-BUTANEDIOL H - 201
1vio_A_1971vio   A     BU11,4-BUTANEDIOL R - 202
1vio_A_1971vio   A     BU11,4-BUTANEDIOL W - 203
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o91_A_6581o91   A SO4SO4 BINDING SITE FOR CHAIN CY - 661
1o91_A_6581o91   A SO4SO4 BINDING SITE FOR CHAIN CA - 663
1uv0_A_191uv0   A AC2ZN BINDING SITE FOR CHAIN AH - 24

Clusters included in this Subclass
CLUSTER: HA.1.41
CLUSTER: HA.2.137
CLUSTER: HA.2.148
CLUSTER: HA.3.187
CLUSTER: HA.3.63