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PDB code:

Information on SUBCLASS 5.2.2

Subclass Accession number: 6354 Subclass: 5.2.2 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 53 Average sequence ID (%) : 14.7 +/- 16.7 Average RMSD (Å) : 0.726 +/- 0.323 Consensus geometry d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 225-270

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1agd_A_121	1agd	A	124	135	IALNEDLRSWTA	EEE-TTSS-EEE	bbxxaalabbbb
1c22_A_214	1c22	A	214	225	IRTMKDGWTVKT	EEE-TTSS-EEE	bbxxaavapbbx
1cjx_A_198	1cjx	A	203	214	AMSAPDGMIRIP	EEE-TTSS-EEE	xxbxaavaxbbx
1cru_A_407	1cru	A	410	421	VIASPDGNVLYV	EEE-TTSS-EEE	bbbxaavabbbb
1crz_A_229	1crz	A	229	239	.AFSPDGSKLAF	.EE-TTSS-EEE	.bxxaavabbbb
1crz_A_378	1crz	A	381	392	NLVSTDGRFKAR	EEE-TTS--EEE	bbbxaavabbbx
1du3_A_32	1du3	A	32	43	HHISEDGRDCIS	EEE-SSSS-EEE	bbxxaavabbxx
1e4f_T_275	1e4f	T	277	288	QYRGLDGNTIKT	EEE-TTSS-EEE	xbxxaavaxxbb
1eaf_*_486	1eaf	-	486	497	SSLAPSGQALIR	EEE-TTSS-EEE	bbxxaavabbbx
1f6w_A_66	1f6w	A	66	75	.QATITQDSTY.	.EE-TTSSSEE.	.bxxaalabbb.
1fjs_L_115	1fjs	L	115	126	YTLADNGKACIP	EEE-TTSS-EEE	bbxxaavaxbbx
1fxd_*_22	1fxd	-	22	33	FEMNEEGDKAVV	EEE-SSSSSEEE	bbxxaavabxbx
1g6s_A_63	1g6s	A	64	75	YTLSADRTRCEI	EEE-TTS--EEE	bbbxaavabbbb
1ghq_C_43	1ghq	C	45	56	LCITKDKVDGTW	EEE-SSSS--EE	bxbbaavaxbbx
1gl1_I_16	1gl1	I	17	28	CRCGADGKSAAC	EEE-TTSS-EEE	bbppaaUabbbb
1gmu_A_55	1gmu	A	55	66	VLSNEEGTEFVQ	EEE-TTS--EEE	bbbxaavabbbx
1gtk_A_256	1gtk	A	262	273	LVGAPDGSQIIR	EEE-TTSS-EEE	bbbxaavabbxb
1gxs_A_80	1gxs	A	80	91	FRVHTNGESLLL	EEE-TTSS-EEE	bbbxaavabbbx
1h8g_A_282	1h8g	A	283	294	FIQSADGTGWYY	EEE-SSSS-EEE	bbxxaavabbbb
1hsb_A_121	1hsb	A	124	135	IALKEDLRSWTA	EEE-TTSS-EEE	bbxxaalabbbx
1i4f_A_121	1i4f	A	124	135	IALKEDLRSWTA	EEE-TTSSSEEE	bbxxaavabbbb
1icp_A_140	1icp	A	140	149	.QIMSNGIDIA.	.EE-TTSS-EE.	.bxxaavaxbx.
1ijq_A_682	1ijq	A	682	691	.LLARDMRSCL.	.EE-TTSS-EE.	.bxxaavaxbb.
1ivy_A_73	1ivy	A	73	84	FLVQPDGVTLEY	EEE-TTSS-EEE	bbxbaavaxbbp
1jmx_B_299	1jmx	B	300	311	VAFDKKGDKLYL	EEE-SSSS-EEE	xbbxaavabbxb
1k32_A_344	1k32	A	346	357	FIQDVSGTYVLK	EEE-TTSSSEEE	bbbxaavabbbx
1k3s_A_69	1k3s	A	70	81	IGADADNTALVA	EEE-TTS--EEE	bbbxaalabxbb
1k5n_A_121	1k5n	A	124	135	IALNEDLSSWTA	EEE-TTSS-EEE	bbxxaavNbbbx
1kfi_A_303	1kfi	A	305	316	AACDGDADRNMI	EEE-TTS-BEEE	bbbxaalabbbb
1kli_L_118	1kli	L	118	129	YSLLADGVSCTP	EEE-TTSS-EEE	bbxxaavaxbbp
1ko7_A_176	1ko7	A	178	189	EIREISKDELIG	EEEESSSS-EEE	xbbbaalNbbbb
1l0q_A_201	1l0q	A	205	216	IAVNPEGTKAYV	EEE-TTSSBEEE	bbxxaavabbxb
1lk2_A_121	1lk2	A	124	135	IALNEDLKTWTA	EEE-TTSS-EEE	bbxxaavabbbb
1lwd_A_291	1lwd	A	294	305	VLVCPDGKTIEA	EEE-TTSS-EEE	bxbxaavaxbbx
1ly2_A_42	1ly2	A	44	55	LCITKDKVDGTW	EEE-SSSSS-EE	bxbbaavabxbx
1mda_H_129	1mda	H	129	140	IGNCASSACLLF	EEE-TTSS-EEE	bbxxaavabbbb
1mzb_A_67	1mzb	A	68	79	VRHNFDGGHAVF	EEE-SSSSS-EE	bbbbaagabxbb
1nr0_A_414	1nr0	A	417	428	LAVSADGDIAVA	EEE-TTSS-EEE	bbbxaavabbbb
1nzi_A_148	1nzi	A	148	157	.FLHDDMKNCG.	.EE-TTSS-EE.	.bxxaavabbb.
1o0x_A_217	1o0x	A	217	228	VVVKEDGWTAVT	EEE-TTSS-EEE	bbxxaavaxxbx
1oi4_A_63	1oi4	A	63	74	TVKGKKGEASVT	EEE-TTSS-EEE	bbbxaavabbbx
1oke_A_238	1oke	A	239	250	TFKNPHAKKQDV	EEE-SSSS--EE	bbbbaalabbbb
1pxf_A_85	1pxf	A	85	96	CAETDDGSESVL	EEE-TTS--EEE	bxxxaalNxbbx
1qhd_A_158	1qhd	A	167	178	NRSQPAHDNLMG	EE--TT-SS-EE	abbbaalabxbe
1qhd_A_236	1qhd	A	237	248	VITSADGATTWY	EEE-TTSS-EEE	bbxxaavabbbb
1qi9_A_446	1qi9	A	446	457	VYPDDDGLKLID	EEE-TTSSSEEE	bbxxaavabxbp
1ri6_A_254	1ri6	A	258	269	FSVSEDGSVLSK	EEE-TTS--EEE	bbbxaavabxbx
1s18_A_249	1s18	A	251	262	LSASPDFGDIAV	EEE-TTSSSEEE	bbbxaavabbbb
1tbg_A_315	1tbg	A	318	329	LGVTDDGMAVAT	EEE-TTSS-EEE	bbbpaaUabbbb
1tol_A_36	1tol	A	44	55	VVCTGDETQCYG	EEE-TTSSSEEE	bbbxaavabbbb
1uzp_A_1518	1uzp	A	1518	1527	.ELNPTRVGCV.	.EE-TTSSBEE.	.bxxaavabbb.
2hts_*_216	2hts	-	216	226	.HWSTSGESIVV	.EE-TTSSSEEE	.bxxaavabbbb
3pmg_A_282	3pmg	A	284	295	AAFDGDGDRNMI	EEE-TTSS-EEE	bbbxaavabbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1c22_A_214	1c22	A	MF32-AMINO-4-TRIFLUOROMETHYLSULFANYL-BUTYRIC ACID	W - 221
1cjx_A_198	1cjx	A	FE2FE (II) ION	P - 214
1cjx_A_198	1cjx	A	ACTACETATE ION	P - 214
1cjx_A_198	1cjx	A	ACTACETATE ION	N - 216
1cru_A_407	1cru	A	PQQPYRROLOQUINOLINE QUINONE	R - 408
1crz_A_229	1crz	A	MSESELENOMETHIONINE	S - 235
1crz_A_229	1crz	A	MSESELENOMETHIONINE	K - 236
1crz_A_229	1crz	A	MSESELENOMETHIONINE	L - 237
1crz_A_229	1crz	A	MSESELENOMETHIONINE	A - 238
1crz_A_229	1crz	A	MSESELENOMETHIONINE	F - 239
1crz_A_378	1crz	A	MSESELENOMETHIONINE	S - 378
1crz_A_378	1crz	A	MSESELENOMETHIONINE	L - 382
1crz_A_378	1crz	A	MSESELENOMETHIONINE	V - 383
1crz_A_378	1crz	A	MSESELENOMETHIONINE	S - 384
1crz_A_378	1crz	A	MSESELENOMETHIONINE	T - 385
1fjs_L_115	1fjs	L	GOLGLYCEROL	Y - 115
1fjs_L_115	1fjs	L	GOLGLYCEROL	P - 126
1fxd_*_22	1fxd	*	F3SFE3-S4 CLUSTER	F - 22
1fxd_*_22	1fxd	*	F3SFE3-S4 CLUSTER	M - 24
1fxd_*_22	1fxd	*	F3SFE3-S4 CLUSTER	K - 30
1fxd_*_22	1fxd	*	F3SFE3-S4 CLUSTER	A - 31
1g6s_A_63	1g6s	A	FMTFORMIC ACID	S - 63
1g6s_A_63	1g6s	A	FMTFORMIC ACID	Y - 64
1g6s_A_63	1g6s	A	FMTFORMIC ACID	T - 65
1g6s_A_63	1g6s	A	FMTFORMIC ACID	L - 66
1g6s_A_63	1g6s	A	FMTFORMIC ACID	S - 67
1g6s_A_63	1g6s	A	FMTFORMIC ACID	R - 72
1g6s_A_63	1g6s	A	FMTFORMIC ACID	C - 73
1g6s_A_63	1g6s	A	FMTFORMIC ACID	E - 74
1h8g_A_282	1h8g	A	CHTCHOLINE ION	Y - 293
1i4f_A_121	1i4f	A	1PG2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL	D - 122
1icp_A_140	1icp	A	2PENONAETHYLENE GLYCOL	Q - 140
1icp_A_140	1icp	A	2PENONAETHYLENE GLYCOL	I - 141
1icp_A_140	1icp	A	2PENONAETHYLENE GLYCOL	M - 142
1icp_A_140	1icp	A	2PENONAETHYLENE GLYCOL	S - 143
1icp_A_140	1icp	A	2PENONAETHYLENE GLYCOL	A - 149
1ivy_A_73	1ivy	A	NAGN-ACETYL-D-GLUCOSAMINE	Q - 76
1ivy_A_73	1ivy	A	NAGN-ACETYL-D-GLUCOSAMINE	P - 77
1ivy_A_73	1ivy	A	NAGN-ACETYL-D-GLUCOSAMINE	D - 78
1ivy_A_73	1ivy	A	NAGN-ACETYL-D-GLUCOSAMINE	G - 79
1k3s_A_69	1k3s	A	MSESELENOMETHIONINE	T - 77
1k3s_A_69	1k3s	A	MSESELENOMETHIONINE	A - 78
1k3s_A_69	1k3s	A	MSESELENOMETHIONINE	L - 79
1k3s_A_69	1k3s	A	MSESELENOMETHIONINE	V - 80
1k3s_A_69	1k3s	A	MSESELENOMETHIONINE	A - 81
1k3s_A_69	1k3s	A	MSESELENOMETHIONINE	L - 82
1k5n_A_121	1k5n	A	GOLGLYCEROL	D - 122
1k5n_A_121	1k5n	A	GOLGLYCEROL	A - 125
1k5n_A_121	1k5n	A	GOLGLYCEROL	N - 127
1k5n_A_121	1k5n	A	GOLGLYCEROL	T - 134
1kfi_A_303	1kfi	A	ZNZINC ION	D - 308
1kfi_A_303	1kfi	A	ZNZINC ION	G - 309
1kfi_A_303	1kfi	A	ZNZINC ION	D - 310
1kfi_A_303	1kfi	A	ZNZINC ION	A - 311
1kfi_A_303	1kfi	A	ZNZINC ION	D - 312
1kfi_A_303	1kfi	A	ZNZINC ION	R - 313
1l0q_A_201	1l0q	A	MSESELENOMETHIONINE	A - 201
1l0q_A_201	1l0q	A	MSESELENOMETHIONINE	P - 202
1l0q_A_201	1l0q	A	MSESELENOMETHIONINE	K - 213
1l0q_A_201	1l0q	A	MSESELENOMETHIONINE	A - 214
1l0q_A_201	1l0q	A	MSESELENOMETHIONINE	Y - 215
1l0q_A_201	1l0q	A	MSESELENOMETHIONINE	V - 216
1lwd_A_291	1lwd	A	ICTISOCITRIC ACID	S - 293
1lwd_A_291	1lwd	A	ICTISOCITRIC ACID	E - 306
1mzb_A_67	1mzb	A	ZNZINC ION	H - 70
1mzb_A_67	1mzb	A	ZNZINC ION	F - 72
1mzb_A_67	1mzb	A	ZNZINC ION	D - 73
1mzb_A_67	1mzb	A	ZNZINC ION	G - 74
1mzb_A_67	1mzb	A	ZNZINC ION	G - 75
1mzb_A_67	1mzb	A	ZNZINC ION	H - 76
1mzb_A_67	1mzb	A	ZNZINC ION	E - 80
1qi9_A_446	1qi9	A	IODIODIDE ION	Y - 447
1qi9_A_446	1qi9	A	IODIODIDE ION	P - 448
1qi9_A_446	1qi9	A	IODIODIDE ION	D - 449
1qi9_A_446	1qi9	A	IODIODIDE ION	D - 450
1qi9_A_446	1qi9	A	IODIODIDE ION	I - 456
1qi9_A_446	1qi9	A	IODIODIDE ION	D - 457
1s18_A_249	1s18	A	ACTACETATE ION	L - 249
1s18_A_249	1s18	A	TMNTRIS(HYDROXYMETHYL)AMINOMETHANE	D - 259
1s18_A_249	1s18	A	TMNTRIS(HYDROXYMETHYL)AMINOMETHANE	I - 260
1s18_A_249	1s18	A	TMNTRIS(HYDROXYMETHYL)AMINOMETHANE	A - 261
1s18_A_249	1s18	A	TMNTRIS(HYDROXYMETHYL)AMINOMETHANE	V - 262
1s18_A_249	1s18	A	TMNTRIS(HYDROXYMETHYL)AMINOMETHANE	S - 263
3pmg_A_282	3pmg	A	PHSPHOSPHONO GROUP	D - 287
3pmg_A_282	3pmg	A	MGMAGNESIUM ION	D - 287
3pmg_A_282	3pmg	A	PHSPHOSPHONO GROUP	G - 288
3pmg_A_282	3pmg	A	MGMAGNESIUM ION	G - 288
3pmg_A_282	3pmg	A	PHSPHOSPHONO GROUP	D - 289
3pmg_A_282	3pmg	A	MGMAGNESIUM ION	D - 289
3pmg_A_282	3pmg	A	MGMAGNESIUM ION	G - 290
3pmg_A_282	3pmg	A	PHSPHOSPHONO GROUP	D - 291
3pmg_A_282	3pmg	A	MGMAGNESIUM ION	D - 291
3pmg_A_282	3pmg	A	PHSPHOSPHONO GROUP	R - 292
3pmg_A_282	3pmg	A	MGMAGNESIUM ION	R - 292

Clusters included in this Subclass

CLUSTER: HA.5.26

CLUSTER: HA.6.9

CLUSTER: HA.7.3

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